rs30559813 SNP Detail

Summary

• ID
  rs30559813
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:188920192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGGACTTC TAATCTGCAC
  ATGCCGCATT GTAGTGAGAA TTGCCTTGGA GACACATAAA TAGCTACCGC ATGGGAAACC
  AGGGGAACAA ATGCTCCACT TGCTAGCTAG CATGCCAGCA TGCTGGGATA AAGCTCTTCT
  ATAGAAAAGT AACAATTCAG GCGTGCCAAA GAGTTCACAA TCTCCACGGA GCAAAGTACC
  Y
  CTCGACACGG AATGCAGACC TCAACACCTG CTGCCTGAAA TACTAATGGA CAGGGTGCCC
  TGGCTTCCTT CCCACAGCCT TGAAAGCAAG GCCTCAGCTG CTGTGCAATG CGGTTGAGGA
  GGAAAATAAC TGAGACTCTG TCTAGTCTGA AGTCAACTGA GCATCATCCC GGGAGCTGGT
  ATCAGGAGCT TGTGTTGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss44940628	mCV23588910	ABI	CRAMUS_MOUSE	f	SNP	C	T	C					C		C
ss46754752	NES10650385	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C	C	C	C	C	T
ss146484420	ENSMUSSNP3156751	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30559813					SNP	?	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46754752	NES10650385	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:188920192 () rs orientation: forward

Symbol	Name	Function Class
Rr1101	regulatory region 1101	within coordinates
Rr425768	regulatory region 425768	237 bp distal
Rr425769	regulatory region 425769	within coordinates