rs30559826 SNP Detail

Summary

• ID
  rs30559826
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87825152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGCCTGGCGG CTGCAAGGAT TTAAACTGAG GACCTTTGGA
  AGAGCAGTCA GTGTTCTTAC CTACTGAGCC ATCTCAGCAG CCCCTCCAAG AAGCTTTTTT
  W
  AAAAATCCTT TAAAGTAGCC GGGTGTGGAG GCGCACGCCT TTAATCCCAG CACTTGGAAG
  GCAGAGGCAG GCGGATTTCT GCGTTCTAGA CCTGGTCTG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45442061	mCV23484223	ABI	CRAMUS_MOUSE	f	SNP	A	A	T
ss135468771	ENSMUSSNP3248379	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
ss320835502	CHEV_3_87721767	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30559826					SNP	A	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87825152 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13346	CpG island 13346	1510 bp proximal
Gm64606	predicted gene, 64606	580 bp downstream
Hdgf	heparin binding growth factor	1713 bp downstream
Mrpl24	mitochondrial ribosomal protein L24	1661 bp upstream
Rr367453	regulatory region 367453	1408 bp upstream
Tssr29862	transcription start site region 29862	1645 bp upstream
Tssr29863	transcription start site region 29863	1670 bp upstream
Tssr29864	transcription start site region 29864	1683 bp upstream
Tssr29865	transcription start site region 29865	1722 bp upstream
Tssr29866	transcription start site region 29866	1815 bp upstream
Tssr29867	transcription start site region 29867	1848 bp upstream