rs30559846 SNP Detail

Summary

• ID
  rs30559846
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:57799361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAAACGGG AGCGACCTAG
  AAAACACATG TTACCAGCAT CCAGATAGTG AACTTCAGGA ATGCATCAGA GCTCAGCCCT
  TGGGAGGTTG TCAGCCCTTC AAAGAAGTTT TAAATTCCCC ATTAAGATAA AACAATTCAA
  TCAGACATGG TGACCCATCC CTGTAATCAT AGCATGTGGG AGACTGAGGC CTAGGCTACA
  Y
  AGGAAGATCC TGTCTTAAGA AGGACTGTAG CTGAATAGAG TATTGGCCCA GCATGTGTAA
  GGTTCAGACT CCCTCTGGTA GCTAAGAAAA CAATAAAATT AAATTAAATG AACAAATCCA
  AGAATGCAGA TTGCAGAAGA GGGCCTAGTT TGACTACTTT GTTCAAGGCC CTGAGGTCCA
  TTCCTGGCAC TTGAAAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45940229	mCV23275491	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss133245443	ENSMUSSNP221295	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30559846					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57799361 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr399671	regulatory region 399671			600 bp upstream
Rr631165	regulatory region 631165			174 bp proximal
Rr631166	regulatory region 631166			1111 bp proximal
Rr631167	regulatory region 631167			1805 bp proximal
Tssr56734	transcription start site region 56734			1336 bp upstream
Vopp1	vesicular, overexpressed in cancer, prosurvival protein 1			Intron
				Noncoding-Transcript-Variant