rs30560356 SNP Detail

Summary

• ID
  rs30560356
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:56630427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCC AATGAGAAAT TCCAAACACA
  K
  TAATGCAGTT AGTCCATAAA TTAAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45442363	mCV23384111	ABI	CRAMUS_MOUSE	f	SNP		G	T					G		G
ss46973412	NES10791377	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	G	G	G		G	G	T	G			T	G	T		G
ss135195071	ENSMUSSNP261473	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T							G				T
ss320778031	CHEV_3_56526928	CHEVERUD	SCREENING_POP	f	SNP													G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30560356					SNP	G	G	T	T	G	G	G	G	G	G	T	G	G	T	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46973412	NES10791377	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:56630427 () rs orientation: forward

Symbol	Name	Function Class
Rr75870	regulatory region 75870	1466 bp proximal
Rr375009	regulatory region 375009	1253 bp downstream
Rr375010	regulatory region 375010	1482 bp upstream