rs30561439 SNP Detail

Summary

• ID
  rs30561439
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79437747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTATTAA AGTCATAACA
  AAAGAAGTTT ATTAAAAGTT TGAAAACCAC TCACTCACAC AAAGTTTTTT GGGTTTTGTT
  TTTGTTTTTT ACAAATTTTA AAGAAATTGC CATGATCCAG GCTATTATCC TTTGTGGATG
  GCCACCCCAA ATAACATCTT GGGGATTTGG AAATCTAGAA GAATAAAAAA ACAGAAGGGA
  R
  AATGTCCTAA TGATGCAGTT TTGAACTCCC AGAGAAGACT CTTTAAAACA ACCTGAGCCT
  ACCCCATAGC TCAGCAGTAG CATGCCGCAG TCAGCCCTGG GGCTGCCTCC CAGAGGTGGA
  GCTCCACTTC CCCACCACTC AACCCTTCTT TCCTGACAGG AGCAGGTAAG AGCACACGTA
  TCACAGTGCC ATCCTCAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45442178	mCV24189748	ABI	CRAMUS_MOUSE	f	SNP	G	G	A						A
ss47031408	NES10775884	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A	A	A	A	A	A	A	A	A	A
ss135372482	ENSMUSSNP2462498	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30561439					SNP	G	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47031408	NES10775884	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79437747 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	within coordinates
Rr2009	regulatory region 2009	614 bp proximal
Rr375221	regulatory region 375221	856 bp upstream
Rr578536	regulatory region 578536	1796 bp distal
Rr578537	regulatory region 578537	402 bp distal
Rr578538	regulatory region 578538	1108 bp proximal
Tssr29582	transcription start site region 29582	470 bp downstream
Tssr29583	transcription start site region 29583	1570 bp upstream
Tssr33705	transcription start site region 33705	1219 bp downstream
Tssr33706	transcription start site region 33706	1237 bp downstream
Tssr33707	transcription start site region 33707	1255 bp downstream
Tssr33708	transcription start site region 33708	1277 bp downstream
Tssr33709	transcription start site region 33709	1297 bp downstream
Tssr33710	transcription start site region 33710	1318 bp downstream
Tssr33711	transcription start site region 33711	1353 bp downstream
Tssr33712	transcription start site region 33712	1391 bp downstream
Tssr33713	transcription start site region 33713	1434 bp downstream
Tssr33714	transcription start site region 33714	1620 bp downstream
Tssr33715	transcription start site region 33715	1724 bp downstream