rs30561910 SNP Detail

Summary

• ID
  rs30561910
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134097241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGCAAAGT CCCTGCACAT
  GTGGAGTTTT TGTCTCAGTA ATTTCTCCTC TGGAGTGAGT GGGAGAGCCT GGGCTATCAG
  TGTGGTCTGG GGTACTGAGT AGCAGCTTGT AGATAAGGCT GGCCCACAGC TGTGGTTGTG
  GTTGTACACA GGAAAATCAA ATTCCAAACT CCAGCAAACT GTCGACTCAT AACCAAGGAG
  W
  TGTGAAATAA GACATAGACC AGACTCAGGG GCTTCGGTTC TGAATTGGGG TCCAGGAGAT
  CACAGGGTCA GGAGGTTGAC CTAGAAAGGA GGACACTTGG GCTGAGTCAG AGATTGGGAG
  AGACGGCCCT TCCCGAGTAA AGCCTGGTGC CCATAGGGTC AAAACCCCAT AGTCAGCTGG
  AAGATGTTTC CAAACATCTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45940553	mCV24118100	ABI	CRAMUS_MOUSE	f	SNP	A	A	T					T		T
ss48101359	NES11850465	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	T	T		T	T	T	A		T	T	A	T		A
ss133771345	ENSMUSSNP1289125	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T
ss321976683	CHEV_6_134070296	CHEVERUD	SCREENING_POP	f	SNP													T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30561910					SNP	A	A	T	T	T	T	T	T	T	T	T	A	T	T	T	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48101359	NES11850465	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134097241 () rs orientation: forward

Symbol	Name	Function Class
D6Mit374a	DNA segment, Chr 6, Massachusetts Institute of Technology 374a	655 bp distal
D6Mit374b	DNA segment, Chr 6, Massachusetts Institute of Technology 374b	655 bp distal
Etv6	ets variant 6	within coordinates
Rr639573	regulatory region 639573	784 bp distal
Rr639574	regulatory region 639574	260 bp proximal