rs30561964 SNP Detail

Summary

• ID
  rs30561964
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:82936511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCA CAACCATGTA TAATGGGATC
  W
  GGTGCCCTCT TCTGTCTGGT GTGTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45941629	mCV23178310	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	A
ss133345773	ENSMUSSNP3777316	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		A
ss321843743	CHEV_6_82909524	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30561964					SNP	A	T	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:82936511 () rs orientation: forward

Symbol	Name	Function Class
Gm67812	predicted gene, 67812	673 bp upstream
M1ap	meiosis 1 associated protein	within coordinates
Rr379683	regulatory region 379683	1034 bp downstream
Tssr57263	transcription start site region 57263	679 bp upstream
Tssr57264	transcription start site region 57264	711 bp upstream
Tssr57265	transcription start site region 57265	739 bp upstream
Tssr57266	transcription start site region 57266	1010 bp upstream