rs30563439 SNP Detail

Summary

• ID
  rs30563439
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:144995764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGC TTCCTGCTCT GTCCACACAC
  M
  CACTCCCCTG CCAAGACAGC ACAGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45940474	mCV23990595	ABI	CRAMUS_MOUSE	f	SNP	C	C	A
ss133960865	ENSMUSSNP1110276	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
ss322067445	CHEV_6_144998558	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30563439					SNP	C	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144995764 () rs orientation: forward

Symbol	Name	Function Class
Bcat1	branched chain aminotransferase 1, cytosolic	within coordinates
Cpgi18152	CpG island 18152	825 bp distal
Gm15687	predicted gene 15687	within coordinates
Gm26666	predicted gene, 26666	within coordinates
Tssr2055	transcription start site region 2055	959 bp upstream
Tssr59519	transcription start site region 59519	1490 bp downstream
Tssr64036	transcription start site region 64036	1446 bp upstream
Tssr64037	transcription start site region 64037	1396 bp upstream
Tssr64038	transcription start site region 64038	1368 bp upstream
Tssr64039	transcription start site region 64039	1351 bp upstream
Tssr64040	transcription start site region 64040	1332 bp upstream
Tssr64041	transcription start site region 64041	1309 bp upstream
Tssr64042	transcription start site region 64042	1291 bp upstream
Tssr64043	transcription start site region 64043	1233 bp upstream
Tssr64044	transcription start site region 64044	1217 bp upstream
Tssr64045	transcription start site region 64045	1185 bp upstream