rs30563795 SNP Detail

Summary

• ID
  rs30563795
• Variation Type
  SNP
• Alleles
  A/C/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:3050539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGGAATGTCC ACTGTAGGAC ATGGAATATT GCAAGAAAAC TGAAAATCAT GGAAAATGAG
  AAACATCCAC TTGACCACTT GAAAAATGAC GAAATCACTG AAAAAAGTGA AAAATAAGAA
  ATGCACACTG TAGGACCTGG AATATGGCGA GATAACTGAA AATCACGGAA AATGAGAAAT
  ACACAATTTA GGACATGAAA TATGGCGAGG AAAACTGAAC AAGTTGGATA ATTTGAAATG
  TCCACTGTAG GACATGGAAT ATGGTAAGAA AACTGAAAAT CGTGGAAAAT GAGAAACATT
  N
  ACTTGACCAC TTGAAAAATG ACGAAATCAC TGTAAAACGT GAAAAATGGA AATGCACACT
  GTAGGACCTG GAATATGCTG AGAAAACAGA AAATCACGGA AAATGAGAAA TACACACTTT
  AGGACGTGAA ATATGGCGAG GAAAATTGAA AAAGTTGGAT AATTTAGAAA TGTCCACTGT
  AGGACATGGA ATATGGCAAG AAAACTGAAA ATCATGGAAA ATGAGAAACA TCCACTTGAC
  CACGTTAAAA ATGACGAAAT CACTGCAAAA TGTAAAAAAT GAGAATGCAC ACTGTAGGAC
                                                                   
  
  N = A/C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46419709	mCV25389155	ABI	CRAMUS_MOUSE	f	SNP		A	A	C
ss46420038	mCV25364797	ABI	CRAMUS_MOUSE	f	SNP	C			C	T
ss46420488	mCV25361410	ABI	CRAMUS_MOUSE	r	SNP			T		G
ss46431464	mCV22817905	ABI	CRAMUS_MOUSE	f	SNP	G				C
ss46442460	mCV22880462	ABI	CRAMUS_MOUSE	f	SNP	T				C
ss46463462	mCV22979224	ABI	CRAMUS_MOUSE	r	SNP	G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30563795					SNP	C	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:3050539 () rs orientation: forward

Symbol	Name	Function Class
Tssr4284	transcription start site region 4284	1787 bp downstream
Tssr4285	transcription start site region 4285	1762 bp upstream
Tssr4286	transcription start site region 4286	1658 bp downstream
Tssr4287	transcription start site region 4287	1623 bp upstream
Tssr4288	transcription start site region 4288	1595 bp downstream
Tssr4289	transcription start site region 4289	1500 bp upstream
Tssr4290	transcription start site region 4290	1493 bp downstream
Tssr4291	transcription start site region 4291	1413 bp upstream
Tssr4292	transcription start site region 4292	1377 bp downstream
Tssr4293	transcription start site region 4293	1342 bp upstream
Tssr4294	transcription start site region 4294	1340 bp downstream
Tssr4295	transcription start site region 4295	1267 bp upstream
Tssr4296	transcription start site region 4296	1304 bp downstream
Tssr4297	transcription start site region 4297	1240 bp upstream
Tssr4298	transcription start site region 4298	1222 bp downstream
Tssr4299	transcription start site region 4299	1182 bp downstream
Tssr4300	transcription start site region 4300	1144 bp downstream
Tssr4301	transcription start site region 4301	1126 bp upstream
Tssr4302	transcription start site region 4302	1114 bp upstream
Tssr4303	transcription start site region 4303	1059 bp downstream
Tssr4304	transcription start site region 4304	1030 bp upstream
Tssr4305	transcription start site region 4305	961 bp downstream
Tssr4306	transcription start site region 4306	942 bp upstream
Tssr4307	transcription start site region 4307	921 bp downstream
Tssr4308	transcription start site region 4308	889 bp upstream
Tssr4309	transcription start site region 4309	845 bp upstream
Tssr4310	transcription start site region 4310	798 bp downstream
Tssr4311	transcription start site region 4311	770 bp upstream
Tssr4312	transcription start site region 4312	690 bp downstream
Tssr4313	transcription start site region 4313	631 bp upstream
Tssr4314	transcription start site region 4314	619 bp downstream
Tssr4315	transcription start site region 4315	595 bp downstream
Tssr4316	transcription start site region 4316	568 bp upstream
Tssr4317	transcription start site region 4317	492 bp downstream
Tssr4318	transcription start site region 4318	468 bp upstream
Tssr4319	transcription start site region 4319	411 bp upstream
Tssr4320	transcription start site region 4320	347 bp downstream
Tssr4321	transcription start site region 4321	319 bp upstream
Tssr4322	transcription start site region 4322	220 bp downstream
Tssr4323	transcription start site region 4323	185 bp upstream
Tssr4324	transcription start site region 4324	155 bp downstream
Tssr4325	transcription start site region 4325	104 bp downstream
Tssr4326	transcription start site region 4326	66 bp upstream
Tssr4327	transcription start site region 4327	63 bp downstream
Tssr4328	transcription start site region 4328	within coordinates
Tssr4329	transcription start site region 4329	within coordinates
Tssr4330	transcription start site region 4330	120 bp upstream
Tssr4331	transcription start site region 4331	144 bp downstream
Tssr4332	transcription start site region 4332	250 bp downstream
Tssr4333	transcription start site region 4333	262 bp upstream
Tssr4334	transcription start site region 4334	284 bp downstream
Tssr4335	transcription start site region 4335	431 bp downstream
Tssr4336	transcription start site region 4336	435 bp upstream
Tssr4337	transcription start site region 4337	508 bp downstream