rs30563971 SNP Detail

Summary

• ID
  rs30563971
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131564447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCT GTTTGTTCCA GAGTAAGAAA
  Y
  CAAACACTGT AAAGGAAGCA CTATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss44940838	mCV25112568	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss145480034	ENSMUSSNP791296	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss319974759	CHEV_1_133533286	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30563971					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131564447 () rs orientation: forward

Symbol	Name	Function Class
Ctse	cathepsin E	1605 bp upstream
Rr12195	regulatory region 12195	754 bp proximal
Rr28482	regulatory region 28482	1153 bp proximal
Rr35674	regulatory region 35674	1838 bp distal
Rr366988	regulatory region 366988	1505 bp upstream
Tssr8635	transcription start site region 8635	1561 bp upstream
Tssr8636	transcription start site region 8636	1597 bp upstream
Tssr8637	transcription start site region 8637	1645 bp upstream
Tssr8638	transcription start site region 8638	1679 bp upstream
Tssr8639	transcription start site region 8639	1731 bp upstream
Tssr8640	transcription start site region 8640	1776 bp upstream