rs30564501 SNP Detail

Summary

• ID
  rs30564501
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:23123258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACGGTGTTA ATGGGGTAGA TTTCATAAAC TGCTTCCTTC
  CTCCCAGATG CGTTTCCAGC TAAACCCGAC TGAGTCGGGA GGGGTTGACT TGCCAATGGA
  R
  GTATGTCTCC ACTGTTTTCC CATTATAGGT CCCCTAAGGA GACTTGAGAT TTGTTTTTCT
  AACAAATGCC CACCCTATAC CTACCCTATG GTGTCTTAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44941538	mCV24752525	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G	A
ss146216213	ENSMUSSNP3463938	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
ss325768048	CHEV_19_23220384	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30564501					SNP	G	G	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:23123258 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Klf9	Kruppel-like transcription factor 9			Intron
				Noncoding-Transcript-Variant
Rr545293	regulatory region 545293			147 bp proximal