rs30565002 SNP Detail

Summary

• ID
  rs30565002
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52225078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAA AAGGGAGGTG GGCTTGCAAA
  R
  GGCCTTACAA GAACAGCTCT CTGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45941560	mCV22669145	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	G
ss133191170	ENSMUSSNP5424163	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		G
ss321799676	CHEV_6_52198097	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30565002					SNP	G	G	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52225078 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17436	CpG island 17436	1326 bp distal
Cpgi17437	CpG island 17437	1210 bp proximal
Gm56036	predicted gene, 56036	1994 bp downstream
Gm56037	predicted gene, 56037	1513 bp downstream
Gm56038	predicted gene, 56038	1290 bp downstream
Gm56039	predicted gene, 56039	445 bp downstream
Gm56040	predicted gene, 56040	234 bp upstream
Gm56041	predicted gene, 56041	1201 bp upstream
Hoxa11os	homeobox A11, opposite strand	within coordinates