rs30565731 SNP Detail

Summary

• ID
  rs30565731
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7430027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTT ATGAAAATGA GTGCAGAGAT
  R
  CACTAAGCTG TCTCAAATTT CAAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45443851	mCV23345010	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G	G
ss134555728	ENSMUSSNP1389420	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30565731					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7430027 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12953	CpG island 12953	1315 bp proximal
Pkia	protein kinase inhibitor, alpha	1702 bp upstream
Rr573236	regulatory region 573236	188 bp proximal
Rr573237	regulatory region 573237	1213 bp proximal
Rr573238	regulatory region 573238	1714 bp proximal
Tssr814	transcription start site region 814	1690 bp upstream
Tssr28292	transcription start site region 28292	1622 bp upstream
Tssr28293	transcription start site region 28293	1631 bp upstream
Tssr28294	transcription start site region 28294	1706 bp upstream
Tssr28295	transcription start site region 28295	1735 bp upstream