rs30566520 SNP Detail

Summary

• ID
  rs30566520
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:37846448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATTC TCCAGGATTT CTGTCTATTC
  Y
  GTCTCAGAAA CTCCCAACCT TCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45942157	mCV24670784	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss133125027	ENSMUSSNP1918227	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss321786254	CHEV_6_37819513	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30566520					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:37846448 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17305	CpG island 17305	822 bp proximal
Rr368051	regulatory region 368051	1997 bp upstream
Rr399615	regulatory region 399615	1041 bp upstream
Rr628726	regulatory region 628726	808 bp proximal
Rr628727	regulatory region 628727	1227 bp proximal
Rr628728	regulatory region 628728	1969 bp proximal
Trim24	tripartite motif-containing 24	1298 bp upstream
Tssr55624	transcription start site region 55624	1195 bp upstream
Tssr55625	transcription start site region 55625	1273 bp upstream
Tssr55626	transcription start site region 55626	1380 bp upstream
Tssr55627	transcription start site region 55627	1415 bp upstream
Tssr55628	transcription start site region 55628	1449 bp upstream
Tssr55629	transcription start site region 55629	1482 bp upstream
Tssr60360	transcription start site region 60360	910 bp downstream
Tssr60361	transcription start site region 60361	1814 bp downstream
Tssr60362	transcription start site region 60362	1964 bp downstream