rs30568988 SNP Detail

Summary

• ID
  rs30568988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:71664499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGAGCCAG CCAGGTTCTG
  CTGATAAAGA GCTAAATAGA TGATACCTCG CTGCCCAGGG CCACTAAATG TTTAGGATGA
  ATTACTTAAG GTATCAACTC GTTGTGTGGT GCTAGAGAGA GAACCCAGGG CCTCACACAT
  CCCAGACATA CATTTACACA CCCTGCTGCC TGGCAACTGC TAGCCTCAAA TGAATTCTAC
  Y
  ATATCTAACT ACATATATTT TTTTTTCCCT TTGGTTTTTC GAGACAGGGT TTCTCTGTGT
  AGCCCTGGCT GTCCTGGAAC TCACTTTGTA GACCAGGCTG GCCTCCAACT CAGAAATCCG
  CCTGCCTCTG CCTCCCGAGT GCTGGGATTA AAGGCGTGCA CCACCACGCC CGGCCATATA
  TTTTTTAAAA ATGCACTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47461829	NES11022224	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30568988					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47461829	NES11022224	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:71664499 () rs orientation: forward

Symbol	Name	Function Class
Fn1	fibronectin 1	within coordinates
Rr412694	regulatory region 412694	1402 bp distal
Tssr12124	transcription start site region 12124	1180 bp upstream
Tssr12125	transcription start site region 12125	699 bp downstream
Tssr12126	transcription start site region 12126	890 bp downstream
Tssr12127	transcription start site region 12127	1939 bp downstream