rs30569165 SNP Detail

Summary

• ID
  rs30569165
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:71661336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCCTGCT CATGTTTATA
  CCAAGACTAT CTGAGGTCCA AATGGATTTG CTTAACTCCT TGGTTCCACT GGTTTATTTA
  AATCTGAGCC ACGGTGAGCT GCTCATTTGT CTTTCAGTCA CCTACCCTAC CGTGTTGGAA
  AGGATACTCC ACGCAATTCG GTATGTTAAT TAATGGTCAG CAAATACAGT TTTACTGTTA
  M
  ACCCAGAAGC CTCGGGTACG AGGCCAAGTA AGAGGCTGTG TGCACAGAAA CTCCATGCTC
  ATTAATTTAA GGGACAGCTC CAAGAAATGG GTTTTGCAAG AAAAACAAGG ATACTAGTTC
  TGTAAGAGTG GATCTTAGAC TTTCTCAAAA CTGGGCAATG TCAAATACCA AACATTTAAA
  AAGAAGTCTG CAAACTAGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47461736	NES11022331	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30569165					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47461736	NES11022331	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:71661336 () rs orientation: forward

Symbol	Name	Function Class
Fn1	fibronectin 1	within coordinates
Rr412694	regulatory region 412694	1506 bp proximal
Tssr12124	transcription start site region 12124	1967 bp downstream