rs30569445 SNP Detail

Summary

• ID
  rs30569445
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3035933 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  CTGTAGGACA TGGAATATGG CAAGAAAACT GAAAATCATG GAAAATGAGA AACAAGCACT
  TGACCATTTG AAAAATGACC AAATCACTGA AAAACGTGAA AAATGAGAAA TGCCCACTGT
  AGGACCTGTA ATATGGCGAG AAAACTGAAA ATCTCGGAAA ATGAGAAGTA CACACTTTAG
  GACGTGAAAT CAACCGAGGA AAACTGAAAA CGTTGGATAA TTTAGAAATG TCCAACATAG
  GACATGGAAT ATGGCAAGAA AACTGAAAAT CATGGAAAAT GAGAAACATC CACTTGACGA
  M
  TTGAAAAATG ACAAAATCAC TGAAAAACGT GAAAAATTAG AAATGCACAC TGTAGGACCT
  GGAATATGCC GAGAAAAGTG AAAATCACGG AAAATGAGAA ATACATACTT TAGGACGTGA
  AATATGGCGA GGAAAACTGA AAAAAGTTGG ATAATTTAGG AATGTCCACT GTAGGACATG
  GAATATGGCA AGAAAACAGA AAATCATGGA AAATGAGAAA CAAGCACTTG ACCACTTGAA
  AAATGACGAA ATCACTGAAA AACATGAAAA ATGAGAAATG CACATTATAG GACCTGGAAT
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46419579	mCV22996161	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30569445					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3035933 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi21328	CpG island 21328	within coordinates
Rr673613	regulatory region 673613	1843 bp distal
Rr673614	regulatory region 673614	983 bp distal
Rr673615	regulatory region 673615	323 bp distal
Rr673616	regulatory region 673616	728 bp proximal
Rr673617	regulatory region 673617	1528 bp proximal
Tssr83597	transcription start site region 83597	1724 bp downstream
Tssr83598	transcription start site region 83598	196 bp downstream
Tssr83599	transcription start site region 83599	30 bp downstream
Tssr83600	transcription start site region 83600	137 bp upstream
Tssr83601	transcription start site region 83601	382 bp upstream
Tssr83602	transcription start site region 83602	423 bp upstream
Tssr83603	transcription start site region 83603	465 bp upstream
Tssr83604	transcription start site region 83604	1397 bp upstream
Tssr88025	transcription start site region 88025	11 bp upstream
Tssr88026	transcription start site region 88026	160 bp downstream
Tssr88027	transcription start site region 88027	414 bp downstream
Tssr88028	transcription start site region 88028	453 bp downstream