rs30569579 SNP Detail

Summary

• ID
  rs30569579
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135776746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACTGAGCC CTCGGTCCCA TATCTCTTCA CAGACATTGG
  TTCAAGTGGC AGCATTTATC ACATCACATA AATCCATGTC ATTGACCCAG TGTTGACATC
  R
  TACCAATGAA CAGGACAGAC AGACAGACCA GGGCCTCATG TCCATGATTT TAAGACCCTC
  TAGCCCCCAT CCCTTCCCTA GTGCAGGCTA CATGGAGAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss44942628	mCV24740606	ABI	CRAMUS_MOUSE	f	SNP		G	G			A
ss49683310	NES12972940	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	A	A	G	A	G
ss145548310	ENSMUSSNP2594158	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs30569579					SNP	G	G	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683310	NES12972940	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135776746 () rs orientation: forward

Symbol	Name	Function Class
Rr12644	regulatory region 12644	1146 bp distal
Rr12645	regulatory region 12645	1655 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr225	transcription start site region 225	1268 bp downstream
Tssr226	transcription start site region 226	998 bp upstream
Tssr227	transcription start site region 227	432 bp downstream
Tssr9015	transcription start site region 9015	1272 bp downstream
Tssr9016	transcription start site region 9016	1020 bp downstream
Tssr9017	transcription start site region 9017	982 bp downstream
Tssr9018	transcription start site region 9018	964 bp downstream
Tssr9019	transcription start site region 9019	931 bp downstream
Tssr9020	transcription start site region 9020	160 bp downstream
Tssr9021	transcription start site region 9021	140 bp downstream
Tssr9022	transcription start site region 9022	335 bp upstream
Tssr9023	transcription start site region 9023	354 bp upstream
Tssr9024	transcription start site region 9024	448 bp upstream
Tssr9025	transcription start site region 9025	737 bp upstream
Tssr9026	transcription start site region 9026	939 bp upstream
Tssr9027	transcription start site region 9027	1049 bp upstream
Tssr9028	transcription start site region 9028	1089 bp upstream
Tssr9029	transcription start site region 9029	1669 bp upstream
Tssr9030	transcription start site region 9030	1704 bp upstream
Tssr9031	transcription start site region 9031	1763 bp upstream
Tssr13890	transcription start site region 13890	1233 bp upstream
Tssr13891	transcription start site region 13891	988 bp upstream
Tssr13892	transcription start site region 13892	921 bp upstream
Tssr13893	transcription start site region 13893	904 bp upstream
Tssr13894	transcription start site region 13894	155 bp upstream
Tssr13895	transcription start site region 13895	111 bp upstream
Tssr13896	transcription start site region 13896	370 bp downstream
Tssr13897	transcription start site region 13897	441 bp downstream
Tssr13898	transcription start site region 13898	1729 bp downstream
Tssr13899	transcription start site region 13899	1797 bp downstream
Tssr13900	transcription start site region 13900	1807 bp downstream