rs30569859 SNP Detail

Summary

• ID
  rs30569859
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3028008 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  GAAAAAGTTG GAAAATTTAG AAATGTCCAC TGTAGGACAA GGAATATGGC AAGAAAACTG
  AAAATCATGG AAAATGAGAA ACATCTACTT GACGACTTGA AAAATGACGA AATCACTTAA
  AAACGTGAAA AATGAGAAAT GCCCACTGAA GGACCTGGAA TATGGGGAGA AAACTGAAAA
  TCACGGCAAA TGAGAAATAC ACACTTTAGG ACGTGAAATA TGGCGAGGAA AACTGAAAAA
  GGTGGAAAAT TTAGAAATGT CCACTGTAGG ACGTGGAATA TGGCAAGAAA ACTGAAAATC
  W
  TGGAAAATGA GAAACATCCA CTTGACGACT TGAAAAATGA GGAAATCACT AAAAAACATC
  AAAAATGAGA AATGCCCACT GAAGGACCTG GAATATGGCG AGAAAACTGA AAATCACGGA
  AAATGAGAAA TACACACTTT AGGATGTGAA ATATGGCGTG GAAAACTGAA AAAGGTGGAA
  AATTTAGAAA TGTTCACTGT AGGACGTGGG AATATGGCAA GAAAACTGAA AATCATGGAA
  AACGAGAAAC ATCCACTTGA GGAATTGAAA AAATGACGA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss46420990	mCV25217257	ABI	CRAMUS_MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs30569859					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3028008 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi21324	CpG island 21324	828 bp distal
Cpgi21325	CpG island 21325	1379 bp proximal
Rr673606	regulatory region 673606	1478 bp distal
Rr673607	regulatory region 673607	998 bp distal
Rr673608	regulatory region 673608	348 bp distal
Rr673609	regulatory region 673609	within coordinates
Rr673610	regulatory region 673610	873 bp proximal
Tssr83582	transcription start site region 83582	1513 bp downstream
Tssr83583	transcription start site region 83583	1326 bp downstream
Tssr83584	transcription start site region 83584	1239 bp downstream
Tssr83585	transcription start site region 83585	863 bp downstream
Tssr83586	transcription start site region 83586	540 bp downstream
Tssr83587	transcription start site region 83587	233 bp downstream
Tssr83588	transcription start site region 83588	1363 bp upstream
Tssr83589	transcription start site region 83589	1647 bp upstream
Tssr88019	transcription start site region 88019	1288 bp upstream
Tssr88020	transcription start site region 88020	1220 bp upstream
Tssr88021	transcription start site region 88021	596 bp upstream
Tssr88022	transcription start site region 88022	520 bp upstream
Tssr88023	transcription start site region 88023	1394 bp downstream