rs30569944 SNP Detail

Summary

• ID
  rs30569944
• Variation Type
  SNP
• Alleles
  A/C/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:3050476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATCCACTTGA CGACTTGAAA AATGACGAAA TCACTAAAAT ACATGAAAAA AGGGAAATGC
  ACACTGAAGG ACCTGGAATA TGGCGAGAAA ACTGAAAATC ACGGAAAATG AGAAATACAC
  ACTTTAGGAC GTGAAATATG GCGAGGAAAA CTGAAAAAGG TGGAAAATTT AGAAATGTCC
  ACTGTAGGAC TTGGAATATG GCAAGAAAAC TGAAAATCAT GGAAAATGAG AAACATCCAC
  TTGACGACTT GAAAAATGAC GAAATCACTA AAATACGTGA AATATGAGAA ATGCACACTG
  N
  AGGACCTGGA ATATGGCGAG AAAACTGAAA ATCACGGAAA ATGAGAAATA CACACTTTAG
  GACGAGAAAT ATGGCGAGGA AAACTGAAAA AGGTGGAAAA TTTAGAAATA TCCACTATAG
  GACGTGGAAT ATGGCAAGAA AACTAAAAAT CATAGAAAAT GAGAAACATC CACTTGATGA
  CTTGAAAAAT GACGAAATCA CTAAAATACG TGAAAAATGA GAAATGCACA CTGAAGGACC
  TGGAATATGG CGAGAACACT GAAAATCACG GAAAATGAGA AATACACACT TTAGGACGTG
                                                                   
  
  N = A/C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46421185	mCV22814925	ABI	CRAMUS_MOUSE	f	SNP	A		T	A	T
ss46428418	mCV22886443	ABI	CRAMUS_MOUSE	r	SNP	A		A	T	A
ss46447492	mCV24863574	ABI	CRAMUS_MOUSE	r	SNP		C	C	T
ss46458642	mCV25380628	ABI	CRAMUS_MOUSE	r	SNP			G		A
ss46463363	mCV25384606	ABI	CRAMUS_MOUSE	r	SNP		G		A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30569944					SNP	?	?	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:3050476 () rs orientation: forward

Symbol	Name	Function Class
Tssr4284	transcription start site region 4284	1850 bp downstream
Tssr4285	transcription start site region 4285	1825 bp upstream
Tssr4286	transcription start site region 4286	1721 bp downstream
Tssr4287	transcription start site region 4287	1686 bp upstream
Tssr4288	transcription start site region 4288	1658 bp downstream
Tssr4289	transcription start site region 4289	1563 bp upstream
Tssr4290	transcription start site region 4290	1556 bp downstream
Tssr4291	transcription start site region 4291	1476 bp upstream
Tssr4292	transcription start site region 4292	1440 bp downstream
Tssr4293	transcription start site region 4293	1405 bp upstream
Tssr4294	transcription start site region 4294	1403 bp downstream
Tssr4295	transcription start site region 4295	1330 bp upstream
Tssr4296	transcription start site region 4296	1367 bp downstream
Tssr4297	transcription start site region 4297	1303 bp upstream
Tssr4298	transcription start site region 4298	1285 bp downstream
Tssr4299	transcription start site region 4299	1245 bp downstream
Tssr4300	transcription start site region 4300	1207 bp downstream
Tssr4301	transcription start site region 4301	1189 bp upstream
Tssr4302	transcription start site region 4302	1177 bp upstream
Tssr4303	transcription start site region 4303	1122 bp downstream
Tssr4304	transcription start site region 4304	1093 bp upstream
Tssr4305	transcription start site region 4305	1024 bp downstream
Tssr4306	transcription start site region 4306	1005 bp upstream
Tssr4307	transcription start site region 4307	984 bp downstream
Tssr4308	transcription start site region 4308	952 bp upstream
Tssr4309	transcription start site region 4309	908 bp upstream
Tssr4310	transcription start site region 4310	861 bp downstream
Tssr4311	transcription start site region 4311	833 bp upstream
Tssr4312	transcription start site region 4312	753 bp downstream
Tssr4313	transcription start site region 4313	694 bp upstream
Tssr4314	transcription start site region 4314	682 bp downstream
Tssr4315	transcription start site region 4315	658 bp downstream
Tssr4316	transcription start site region 4316	631 bp upstream
Tssr4317	transcription start site region 4317	555 bp downstream
Tssr4318	transcription start site region 4318	531 bp upstream
Tssr4319	transcription start site region 4319	474 bp upstream
Tssr4320	transcription start site region 4320	410 bp downstream
Tssr4321	transcription start site region 4321	382 bp upstream
Tssr4322	transcription start site region 4322	283 bp downstream
Tssr4323	transcription start site region 4323	248 bp upstream
Tssr4324	transcription start site region 4324	218 bp downstream
Tssr4325	transcription start site region 4325	167 bp downstream
Tssr4326	transcription start site region 4326	129 bp upstream
Tssr4327	transcription start site region 4327	126 bp downstream
Tssr4328	transcription start site region 4328	44 bp downstream
Tssr4329	transcription start site region 4329	46 bp upstream
Tssr4330	transcription start site region 4330	57 bp upstream
Tssr4331	transcription start site region 4331	81 bp downstream
Tssr4332	transcription start site region 4332	187 bp downstream
Tssr4333	transcription start site region 4333	199 bp upstream
Tssr4334	transcription start site region 4334	221 bp downstream
Tssr4335	transcription start site region 4335	368 bp downstream
Tssr4336	transcription start site region 4336	372 bp upstream
Tssr4337	transcription start site region 4337	445 bp downstream