rs30569990 SNP Detail

Summary

• ID
  rs30569990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:71664871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCATATAT TTTTTAAAAA
  TGCACTTAAG GGCTGGGGAT GTTGTATAGT GGTAGAGCAT TTTTTGATTC ACAGCTTAAA
  GAAAGGAAGG TTAAGGGAAG GGAAGGGAGG GAGAAAGGGA GGGAGGGAAG GAAGAAAAAA
  GAGGGAAGGA GGAGGGAAGA AGGGAGGGGA AACAGAGAGA CAAAAGCACT GAAATTGCAT
  Y
  TCCATTAGCA AAGAAAACTC TAACTCCAGC AGTGAGCATG TTGGACATGA CATGCGTGTT
  GGAAGCATGT ATGTTGGAGT CAGCATTCTC AGAACGCTAG TTTCATTCCA CCTTCAACAT
  TCCTTTCAAC TCGATGTTCC CTAACTGCTG AGCTGTGAAC CTGGGAGTGA GCAGCATGCT
  ATGGAGTTAT CCCAGGTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47461841	NES11022093	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30569990					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47461841	NES11022093	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:71664871 () rs orientation: forward

Symbol	Name	Function Class
Fn1	fibronectin 1	Intron
Rr412694	regulatory region 412694	1774 bp distal
Tssr12124	transcription start site region 12124	1552 bp upstream
Tssr12125	transcription start site region 12125	327 bp downstream
Tssr12126	transcription start site region 12126	518 bp downstream
Tssr12127	transcription start site region 12127	1567 bp downstream
Tssr12128	transcription start site region 12128	1635 bp downstream