rs30570157 SNP Detail

Summary

• ID
  rs30570157
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3027523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TACAGTGTGC ATTTCTCATT TTTCACGTTT TTCAGTGATT TGGTCATTTT TCAAGTCGTC
  ACGTGGATGT TTCTTATTTT CCATGATTTT CAGTTTTCTG GCCATATTCC ATGTCCTACA
  GCGGAGATTT CTAAATTTTC CAATTTTTTC AGTTTTCCTT GTCATATTTC ACGTCCTAAA
  GTGTGTATTT CTCATTTTCC TTGATTTTCA GTTTTCTCGC CATATTCCAG GTCCTACAGT
  GTGCATTTCT CATTTTTCAC GTTTTTCAGT GATTTCGTCA TTTTTCAAGT GGTCAAGTGG
  W
  TGTTTCTCAG TTTCCATGAT TTACAGTTTT CTTGCCATAT TCCATTTCCT ACAGTGGACA
  TTTCTAAATT TTCCACCTTT TTCAGTTTTC CTCGCCATAT TTCACGTCCT AAAGTGTGTA
  TTTCTCATTT TTCGTTATTT TCAGTTTTCT CGCCATATTC CAGATCCTAC AGTGTGCATT
  TCTCGTTTTT CACGTTTTTC AGTGATTTCG TCATTTTTTA AGTCGTCAAG TGAATGTTTC
  TCATTTTTCA TGATTTTCAG TTTTCTTGCC ATATTCAATG TCCTACAGCG GGACATTTCT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46419963	mCV23016381	ABI	CRAMUS_MOUSE	f	SNP			T	A
ss46426748	mCV24687232	ABI	CRAMUS_MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30570157					SNP	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3027523 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21323	CpG island 21323	1615 bp distal
Cpgi21324	CpG island 21324	343 bp distal
Cpgi21325	CpG island 21325	1864 bp proximal
Rr673606	regulatory region 673606	993 bp distal
Rr673607	regulatory region 673607	513 bp distal
Rr673608	regulatory region 673608	within coordinates
Rr673609	regulatory region 673609	358 bp proximal
Rr673610	regulatory region 673610	1358 bp proximal
Tssr83579	transcription start site region 83579	1991 bp downstream
Tssr83580	transcription start site region 83580	1895 bp downstream
Tssr83581	transcription start site region 83581	1650 bp downstream
Tssr83582	transcription start site region 83582	1028 bp downstream
Tssr83583	transcription start site region 83583	841 bp downstream
Tssr83584	transcription start site region 83584	754 bp downstream
Tssr83585	transcription start site region 83585	378 bp downstream
Tssr83586	transcription start site region 83586	55 bp downstream
Tssr83587	transcription start site region 83587	232 bp upstream
Tssr83588	transcription start site region 83588	1848 bp upstream
Tssr88018	transcription start site region 88018	1965 bp upstream
Tssr88019	transcription start site region 88019	803 bp upstream
Tssr88020	transcription start site region 88020	735 bp upstream
Tssr88021	transcription start site region 88021	111 bp upstream
Tssr88022	transcription start site region 88022	35 bp upstream
Tssr88023	transcription start site region 88023	1879 bp downstream