rs30570749 SNP Detail

Summary

• ID
  rs30570749
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:3050443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTAAAAAACG TGAAAAATGA GAAATGCACA CTGAAGGACC TGGAATATGG CGAGAAAACT
  GAAAATCACG GAAAATGAGA AATACACACT TTAGGACGTG AAATATGGCG AGGAAAACTG
  AAAAAGGTGG AAAATTTAGA AATGTCCACT GTAGGACATG GAATATGGCA AGATATCTGA
  AAATCATGGA AAATGAGAAA CATCCACTTG ACGACTTGAA AAATGACGAA ATCACTAAAA
  AACGTGAAAA ATGAGAAATG CCCACTGAAG GACCTGGAAT ATGGAGAGAA AACTGAAAAT
  H
  ACGGAAAATG AGAAATACAC ACTTTAGGAC ATGAAATATG GCGAGGAAAA CTGAAAAAGG
  TGGAAAATTT AGAAATGTCC ACTGTAGGAC GTGGAATATG GCAAGAAAAC TGAAAATCAT
  GGAAAATGAG AAACATCCAC TTGACGACTT GAAAAATGAC GAAATCACTA AAAAACGTGA
  AAAATGAGAA ATGCACACTG AAGGACCTGG AATATGGCGA GAAAACTGAA AATCACAGAA
  AATGAGAAAT ACACACTTTA GGACGTGAAA TATGGCGAGG AAAACTGAAA AAGTAGGAAA
                                                                   
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46420236	mCV22794289	ABI	CRAMUS_MOUSE	f	SNP			C		T
ss46437519	mCV22815854	ABI	CRAMUS_MOUSE	f	SNP				C	A
ss46446373	mCV22980053	ABI	CRAMUS_MOUSE	f	SNP	A				C
ss46452855	mCV22880742	ABI	CRAMUS_MOUSE	f	SNP		C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30570749					SNP	A	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:3050443 () rs orientation: forward

Symbol	Name	Function Class
Tssr4284	transcription start site region 4284	1883 bp downstream
Tssr4285	transcription start site region 4285	1858 bp upstream
Tssr4286	transcription start site region 4286	1754 bp downstream
Tssr4287	transcription start site region 4287	1719 bp upstream
Tssr4288	transcription start site region 4288	1691 bp downstream
Tssr4289	transcription start site region 4289	1596 bp upstream
Tssr4290	transcription start site region 4290	1589 bp downstream
Tssr4291	transcription start site region 4291	1509 bp upstream
Tssr4292	transcription start site region 4292	1473 bp downstream
Tssr4293	transcription start site region 4293	1438 bp upstream
Tssr4294	transcription start site region 4294	1436 bp downstream
Tssr4295	transcription start site region 4295	1363 bp upstream
Tssr4296	transcription start site region 4296	1400 bp downstream
Tssr4297	transcription start site region 4297	1336 bp upstream
Tssr4298	transcription start site region 4298	1318 bp downstream
Tssr4299	transcription start site region 4299	1278 bp downstream
Tssr4300	transcription start site region 4300	1240 bp downstream
Tssr4301	transcription start site region 4301	1222 bp upstream
Tssr4302	transcription start site region 4302	1210 bp upstream
Tssr4303	transcription start site region 4303	1155 bp downstream
Tssr4304	transcription start site region 4304	1126 bp upstream
Tssr4305	transcription start site region 4305	1057 bp downstream
Tssr4306	transcription start site region 4306	1038 bp upstream
Tssr4307	transcription start site region 4307	1017 bp downstream
Tssr4308	transcription start site region 4308	985 bp upstream
Tssr4309	transcription start site region 4309	941 bp upstream
Tssr4310	transcription start site region 4310	894 bp downstream
Tssr4311	transcription start site region 4311	866 bp upstream
Tssr4312	transcription start site region 4312	786 bp downstream
Tssr4313	transcription start site region 4313	727 bp upstream
Tssr4314	transcription start site region 4314	715 bp downstream
Tssr4315	transcription start site region 4315	691 bp downstream
Tssr4316	transcription start site region 4316	664 bp upstream
Tssr4317	transcription start site region 4317	588 bp downstream
Tssr4318	transcription start site region 4318	564 bp upstream
Tssr4319	transcription start site region 4319	507 bp upstream
Tssr4320	transcription start site region 4320	443 bp downstream
Tssr4321	transcription start site region 4321	415 bp upstream
Tssr4322	transcription start site region 4322	316 bp downstream
Tssr4323	transcription start site region 4323	281 bp upstream
Tssr4324	transcription start site region 4324	251 bp downstream
Tssr4325	transcription start site region 4325	200 bp downstream
Tssr4326	transcription start site region 4326	162 bp upstream
Tssr4327	transcription start site region 4327	159 bp downstream
Tssr4328	transcription start site region 4328	77 bp downstream
Tssr4329	transcription start site region 4329	79 bp upstream
Tssr4330	transcription start site region 4330	24 bp upstream
Tssr4331	transcription start site region 4331	48 bp downstream
Tssr4332	transcription start site region 4332	154 bp downstream
Tssr4333	transcription start site region 4333	166 bp upstream
Tssr4334	transcription start site region 4334	188 bp downstream
Tssr4335	transcription start site region 4335	335 bp downstream
Tssr4336	transcription start site region 4336	339 bp upstream
Tssr4337	transcription start site region 4337	412 bp downstream