rs30571574 SNP Detail

Summary

• ID
  rs30571574
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:3050573 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  AGTGATTTCG TCATATTTCA AGTCATCAAG TGGATGTTTC TCATTTTTCA TGATTGTCAG
  TTTTCTTGCC ATATTCCATG TCCTACTGTT GACATTTCTA TATTTTCCAA CTATTTCAGT
  TTTCGTAGCC ATATTTTACC TCCTAAAGTG TGTATATTTC ATTTTCTGTG ATTTTCCGTT
  TTCTCGCCAT ATTCCAGGTA CTACAGTGTG CATTTCTCAT TTTTCACGTT TTTTAGTAAT
  TTCGTCATTT TTCAAGTTGT TGAAGTGGAT GTTTCTCATT TTCCATGATT TTCAGTTTTC
  H
  TGCCATATTC CATGTCCTAC AGTGGACATT TCTAAATTTT CCACCTTTTT CAGTTTTCCT
  CGCCATATTT CACCTCCTAA AGTGTGTATT TTTCATTTTC CGTGATTTTC AGTTATCTCG
  CCATATTCCA GGTCCTACAG TTTGCATTTC TCATTTTTCA CGTTTTTCAG TGATTTCGTC
  ATTTTTCAAT TCCTCAAGTG GATGTTTCTC ATTTTCCATG ATTTTTAGTT TTCTTGCCAT
  ATTCCATGTC CTACAGTGGA CATTTCTAAA TTTTCCACCT TTTTCAGTTT TCCTCGCCAT
                                                                   
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46421297	mCV25359713	ABI	CRAMUS_MOUSE	f	SNP		C	T
ss46429269	mCV22865012	ABI	CRAMUS_MOUSE	r	SNP		G	A
ss46446520	mCV25359000	ABI	CRAMUS_MOUSE	f	SNP		A	T
ss46456623	mCV25360760	ABI	CRAMUS_MOUSE	r	SNP	T	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30571574					SNP	A	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:3050573 () rs orientation: reverse

Symbol	Name	Function Class
Tssr4284	transcription start site region 4284	1753 bp downstream
Tssr4285	transcription start site region 4285	1728 bp upstream
Tssr4286	transcription start site region 4286	1624 bp downstream
Tssr4287	transcription start site region 4287	1589 bp upstream
Tssr4288	transcription start site region 4288	1561 bp downstream
Tssr4289	transcription start site region 4289	1466 bp upstream
Tssr4290	transcription start site region 4290	1459 bp downstream
Tssr4291	transcription start site region 4291	1379 bp upstream
Tssr4292	transcription start site region 4292	1343 bp downstream
Tssr4293	transcription start site region 4293	1308 bp upstream
Tssr4294	transcription start site region 4294	1306 bp downstream
Tssr4295	transcription start site region 4295	1233 bp upstream
Tssr4296	transcription start site region 4296	1270 bp downstream
Tssr4297	transcription start site region 4297	1206 bp upstream
Tssr4298	transcription start site region 4298	1188 bp downstream
Tssr4299	transcription start site region 4299	1148 bp downstream
Tssr4300	transcription start site region 4300	1110 bp downstream
Tssr4301	transcription start site region 4301	1092 bp upstream
Tssr4302	transcription start site region 4302	1080 bp upstream
Tssr4303	transcription start site region 4303	1025 bp downstream
Tssr4304	transcription start site region 4304	996 bp upstream
Tssr4305	transcription start site region 4305	927 bp downstream
Tssr4306	transcription start site region 4306	908 bp upstream
Tssr4307	transcription start site region 4307	887 bp downstream
Tssr4308	transcription start site region 4308	855 bp upstream
Tssr4309	transcription start site region 4309	811 bp upstream
Tssr4310	transcription start site region 4310	764 bp downstream
Tssr4311	transcription start site region 4311	736 bp upstream
Tssr4312	transcription start site region 4312	656 bp downstream
Tssr4313	transcription start site region 4313	597 bp upstream
Tssr4314	transcription start site region 4314	585 bp downstream
Tssr4315	transcription start site region 4315	561 bp downstream
Tssr4316	transcription start site region 4316	534 bp upstream
Tssr4317	transcription start site region 4317	458 bp downstream
Tssr4318	transcription start site region 4318	434 bp upstream
Tssr4319	transcription start site region 4319	377 bp upstream
Tssr4320	transcription start site region 4320	313 bp downstream
Tssr4321	transcription start site region 4321	285 bp upstream
Tssr4322	transcription start site region 4322	186 bp downstream
Tssr4323	transcription start site region 4323	151 bp upstream
Tssr4324	transcription start site region 4324	121 bp downstream
Tssr4325	transcription start site region 4325	70 bp downstream
Tssr4326	transcription start site region 4326	32 bp upstream
Tssr4327	transcription start site region 4327	29 bp downstream
Tssr4328	transcription start site region 4328	within coordinates
Tssr4329	transcription start site region 4329	19 bp downstream
Tssr4330	transcription start site region 4330	154 bp upstream
Tssr4331	transcription start site region 4331	178 bp downstream
Tssr4332	transcription start site region 4332	284 bp downstream
Tssr4333	transcription start site region 4333	296 bp upstream
Tssr4334	transcription start site region 4334	318 bp downstream
Tssr4335	transcription start site region 4335	465 bp downstream
Tssr4336	transcription start site region 4336	469 bp upstream
Tssr4337	transcription start site region 4337	542 bp downstream