rs30571613 SNP Detail

Summary

• ID
  rs30571613
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:29734685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAG GAAGGAAGGA AGGAAGGAAG
  R
  AAGAAAGAAA GAAAGAAAGA AAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45943276	mCV22673651	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss133092107	ENSMUSSNP566211	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30571613					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29734685 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17242	CpG island 17242	653 bp proximal
Rr627623	regulatory region 627623	518 bp proximal
Smo	smoothened, frizzled class receptor	817 bp upstream
Tssr55287	transcription start site region 55287	785 bp upstream
Tssr55288	transcription start site region 55288	925 bp upstream
Tssr55289	transcription start site region 55289	945 bp upstream
Tssr55290	transcription start site region 55290	981 bp upstream
Tssr55291	transcription start site region 55291	1439 bp upstream