rs30572131 SNP Detail

Summary

• ID
  rs30572131
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3027593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATTACTCATG ATCCACATTT TCAGTTATCT TGCTATATTC CATGTCCTAC ACTGGACATT
  TCTAAATTTT CCACCTTTTT CAGTTTTCCT CGCCATATTT CACGTCCCAA ATTGTGTATT
  TCTCATTTTA GGTGATTTTG AGGTTTCTCG CCATATTCCA GGTCCTACAG TGTGCATTTC
  TTATTTTTCA CGTTTTTCAG TGATTTCTTC ATTTTTCAAG TCGTCATGTG GATGTTACTC
  ATTTACTATT AATTTCAGTT TCTTGCCATA TTCCATGTCC TACAGGGGAC AATTCTAAAT
  W
  TTCCACCCTT TTCAGATTTC CTCGCCATAT TTGACCTCCT AAAGTGTGTA TTTCTCATTT
  TCCGTGATTT TCAGGTTTCT CGCCATATTC CAGATCCTAG AGTGTGCATT TCTTATTTTT
  CACGTTTTTC AGTGATTTCG TCATTTTTCA AGTCCTCAAA AGTGGATGTT TCTCATTTTC
  CATGATTTTC AGTTTTCTTG CCATATTCCA TGTCCTACAG TGGACATTTC TAAAATTTCC
  AACTTTTTCA GTTTTCCTCG CCATATTTCA CCTCCTAATG TATGTATTTC TCATTTT   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	DBA/2J
ss46420549	mCV25136611	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	DBA/2J
rs30572131					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3027593 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21323	CpG island 21323	1685 bp distal
Cpgi21324	CpG island 21324	413 bp distal
Cpgi21325	CpG island 21325	1794 bp proximal
Rr673606	regulatory region 673606	1063 bp distal
Rr673607	regulatory region 673607	583 bp distal
Rr673608	regulatory region 673608	within coordinates
Rr673609	regulatory region 673609	288 bp proximal
Rr673610	regulatory region 673610	1288 bp proximal
Tssr83580	transcription start site region 83580	1965 bp downstream
Tssr83581	transcription start site region 83581	1720 bp downstream
Tssr83582	transcription start site region 83582	1098 bp downstream
Tssr83583	transcription start site region 83583	911 bp downstream
Tssr83584	transcription start site region 83584	824 bp downstream
Tssr83585	transcription start site region 83585	448 bp downstream
Tssr83586	transcription start site region 83586	125 bp downstream
Tssr83587	transcription start site region 83587	162 bp upstream
Tssr83588	transcription start site region 83588	1778 bp upstream
Tssr88019	transcription start site region 88019	873 bp upstream
Tssr88020	transcription start site region 88020	805 bp upstream
Tssr88021	transcription start site region 88021	181 bp upstream
Tssr88022	transcription start site region 88022	105 bp upstream
Tssr88023	transcription start site region 88023	1809 bp downstream