rs30572347 SNP Detail

Summary

• ID
  rs30572347
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:71666098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACATTTTA GCATTTAACT
  CGGTAGTTCT CAACCTGTGA GTTGAGACCC CTTTGGTGGC AGATGACCCT TTCACAGGGG
  TCACCTAAGA CCATCAGAAT TCTACACAGA TACTTACATT ATGATTCACG ACAGTGTGGC
  TATAGAGCAG CATGACACTA ATTTTATAGT TGGGGGTCAC CACAGCATTA GGAAGGGTGA
  S
  AGCCATTGAT TTGGGTGATG GGGGACATAG AAAGAGCTGG CAAAGACAAA AACAGCTCCC
  TCTCAGGGAT CTGTCACCCA CGTGACCTGC ACCTCAGTCC TCCCTGAAGG CTAAAGAATG
  AGTCTAATCC ACGTGGGCTT TATCTTCCCC TGGAAGGTTA GAGCGGCTCT CTGGTCTAGT
  CCTAAGAGAT CAGACATCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47461868	NES11022008	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30572347					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47461868	NES11022008	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:71666098 () rs orientation: forward

Symbol	Name	Function Class
Fn1	fibronectin 1	Intron
Tssr12125	transcription start site region 12125	875 bp upstream
Tssr12126	transcription start site region 12126	688 bp upstream
Tssr12127	transcription start site region 12127	340 bp downstream
Tssr12128	transcription start site region 12128	408 bp downstream
Tssr12129	transcription start site region 12129	1162 bp downstream
Tssr12130	transcription start site region 12130	1500 bp downstream
Tssr12131	transcription start site region 12131	1531 bp downstream