rs30572504 SNP Detail

Summary

• ID
  rs30572504
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:71662531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATATATG ACTCTCAGTT
  GATGTCTAGA GAGTGATGTG ATGGAGCTAT GCATATGGGT TAGATTCTGT CTACTAGTAT
  TTACTCAGCC TTTTCTACTT TGTATTCAGT CTATGCGCCC ATGGATTCGT GTGACTTCCT
  TAACCAGTCT CCACCATATT TCCTTTTCCT TCTTTCTTTC TTTTTTGTTT CTTGTTTGTG
  Y
  ATTTTTGTTT GTTTGTTTGT TTGTTTGAGA TAGGGTCTTT CTATATAGTC CTGACTGTTC
  TGGAACTCGC TATGTAGACC AGGCTGGTCT CAAACTCAGA GATCCGCCTG CTTTTGCCTC
  CCACTTGCTG GGATGAATGA ATAAAAGCGT ACGCCGCCAC ACCAGCCTCG GCGGTGGATT
  TTTGGAGAAC CTGGAGCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47461775	NES11022279	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30572504					SNP	T	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47461775	NES11022279	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:71662531 () rs orientation: forward

Symbol	Name	Function Class
Fn1	fibronectin 1	within coordinates
Rr412694	regulatory region 412694	311 bp proximal
Tssr12124	transcription start site region 12124	772 bp downstream