rs30573198 SNP Detail

Summary

• ID
  rs30573198
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:71666833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTACCAC TTCCTCTGAT
  AATGCCTGAC GGGCACAGAA ATAAGAATAA GTTGATAGGA AGCTTTTAAT AATCAAATAG
  CATCCTTGAA CCCAGAGATC CTTAATGAAT GTCAGTAAGT GATGCCATGA CGTGAGACAT
  TCATAGTACT AGCGGCTTTC CCTTCTCGGA GCAGAGGAAT GGAATCAGCC TGAGCAGTGT
  Y
  TGCACCTTTG GGAACTTCAC TGGTGAAGCT AGAGCGGCGA CTCAGCTCCC TCTTCAGCAG
  TGAGCAGCAG CTCTGCAGGA ATCACCCACC TGTACAGCCC GGGAACTGCC CACTGCAGTG
  AACAGCGGGG CTGGCCTTAT AGGTTGCAGA TGCAGGTATT AGGAATGGGG GCGTGTGAAC
  AGACTTGAAG GAAAACGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47461880	NES11022014	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30573198					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47461880	NES11022014	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:71666833 () rs orientation: forward

Symbol	Name	Function Class
Fn1	fibronectin 1	within coordinates
Tssr12125	transcription start site region 12125	1610 bp upstream
Tssr12126	transcription start site region 12126	1423 bp upstream
Tssr12127	transcription start site region 12127	341 bp upstream
Tssr12128	transcription start site region 12128	312 bp upstream
Tssr12129	transcription start site region 12129	427 bp downstream
Tssr12130	transcription start site region 12130	765 bp downstream
Tssr12131	transcription start site region 12131	796 bp downstream
Tssr12132	transcription start site region 12132	1710 bp downstream