rs30573275 SNP Detail

Summary

• ID
  rs30573275
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:3050512 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  TTTCAGGTTT CTCGCCATAA TACAGGTCCT TCAGTGTGCA TTTCTCATTT TTCACGTATT
  TTAGTGATTT CGTCATTTTT CAAGTGGTCA AGTGGATGTT TCTCATTTTC GATGATTTTC
  AGTTTTCTTG CCATATTCCA CGTCCTACAG TGGACATTTC TAAATTTTAA ACCTTTTTCA
  GTTTTCCTCG GCATATTTCA CGTCCTAAAG TGTGTATTTC ACATTTTCCA TGATTTTCAG
  TTTTCTCTCC ATATTCCAGG TCCTTCAGTG TGCATTTCTC ATTTTTCACT TATTTTAGTG
  W
  TTTCGTCATT TTTCAAGTCG TCAAGTGGAT GTTTCTCATT TTCCATGATT TTCAGTTTTC
  TTGCCATATT CCATGTCCTT CAGTGGACAT TTCTAAATTT TCCACCTTTT TCAGTTTTCC
  TCGCCATATT TCACGTCCTA AAGTGTGTAT TTCTCATTTT CAGTGATTTT TAGTTTTCTC
  GCCATATTCC AGGTCCTTCA GTGTGCATTT CTCATTTTTC TCGTTTTTTA GTGATTTCGT
  CATTTTTCAA GTCGTCAAGT GGATTTTTCT CATTTTCCAT GATTTTCAGT TTTCTTGCCA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46422086	mCV25360237	ABI	CRAMUS_MOUSE	f	SNP	A	T
ss46429721	mCV25331963	ABI	CRAMUS_MOUSE	r	SNP	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30573275					SNP	?	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:3050512 () rs orientation: reverse

Symbol	Name	Function Class
Tssr4284	transcription start site region 4284	1814 bp downstream
Tssr4285	transcription start site region 4285	1789 bp upstream
Tssr4286	transcription start site region 4286	1685 bp downstream
Tssr4287	transcription start site region 4287	1650 bp upstream
Tssr4288	transcription start site region 4288	1622 bp downstream
Tssr4289	transcription start site region 4289	1527 bp upstream
Tssr4290	transcription start site region 4290	1520 bp downstream
Tssr4291	transcription start site region 4291	1440 bp upstream
Tssr4292	transcription start site region 4292	1404 bp downstream
Tssr4293	transcription start site region 4293	1369 bp upstream
Tssr4294	transcription start site region 4294	1367 bp downstream
Tssr4295	transcription start site region 4295	1294 bp upstream
Tssr4296	transcription start site region 4296	1331 bp downstream
Tssr4297	transcription start site region 4297	1267 bp upstream
Tssr4298	transcription start site region 4298	1249 bp downstream
Tssr4299	transcription start site region 4299	1209 bp downstream
Tssr4300	transcription start site region 4300	1171 bp downstream
Tssr4301	transcription start site region 4301	1153 bp upstream
Tssr4302	transcription start site region 4302	1141 bp upstream
Tssr4303	transcription start site region 4303	1086 bp downstream
Tssr4304	transcription start site region 4304	1057 bp upstream
Tssr4305	transcription start site region 4305	988 bp downstream
Tssr4306	transcription start site region 4306	969 bp upstream
Tssr4307	transcription start site region 4307	948 bp downstream
Tssr4308	transcription start site region 4308	916 bp upstream
Tssr4309	transcription start site region 4309	872 bp upstream
Tssr4310	transcription start site region 4310	825 bp downstream
Tssr4311	transcription start site region 4311	797 bp upstream
Tssr4312	transcription start site region 4312	717 bp downstream
Tssr4313	transcription start site region 4313	658 bp upstream
Tssr4314	transcription start site region 4314	646 bp downstream
Tssr4315	transcription start site region 4315	622 bp downstream
Tssr4316	transcription start site region 4316	595 bp upstream
Tssr4317	transcription start site region 4317	519 bp downstream
Tssr4318	transcription start site region 4318	495 bp upstream
Tssr4319	transcription start site region 4319	438 bp upstream
Tssr4320	transcription start site region 4320	374 bp downstream
Tssr4321	transcription start site region 4321	346 bp upstream
Tssr4322	transcription start site region 4322	247 bp downstream
Tssr4323	transcription start site region 4323	212 bp upstream
Tssr4324	transcription start site region 4324	182 bp downstream
Tssr4325	transcription start site region 4325	131 bp downstream
Tssr4326	transcription start site region 4326	93 bp upstream
Tssr4327	transcription start site region 4327	90 bp downstream
Tssr4328	transcription start site region 4328	8 bp downstream
Tssr4329	transcription start site region 4329	10 bp upstream
Tssr4330	transcription start site region 4330	93 bp upstream
Tssr4331	transcription start site region 4331	117 bp downstream
Tssr4332	transcription start site region 4332	223 bp downstream
Tssr4333	transcription start site region 4333	235 bp upstream
Tssr4334	transcription start site region 4334	257 bp downstream
Tssr4335	transcription start site region 4335	404 bp downstream
Tssr4336	transcription start site region 4336	408 bp upstream
Tssr4337	transcription start site region 4337	481 bp downstream