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rs30573720 SNP Detail
Summary
  • ID
    rs30573720
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:153362234 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TCTTT TACAGACCTA GAACTTATCC
    Y
    CTTGTCGAGA GCCTAGATGG ATGCC                                      
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
ss44942470 mCV25366481 ABI CRAMUS_MOUSE f SNP T T T C
ss145743734 ENSMUSSNP4347578 ENSEMBL ENSEMBL_Sanger f SNP T T C
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
rs30573720 SNP T T T C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:153362234 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi867 CpG island 867 294 bp proximal
Dhx9 DExH-box helicase 9 Intron
Noncoding-Transcript-Variant
Rr396394 regulatory region 396394 1032 bp upstream
Rr420681 regulatory region 420681 955 bp distal
Rr420682 regulatory region 420682 within coordinates
Rr420683 regulatory region 420683 235 bp distal
Rr420684 regulatory region 420684 1026 bp proximal
Rr420685 regulatory region 420685 1110 bp proximal
Tssr9459 transcription start site region 9459 408 bp upstream
Tssr9460 transcription start site region 9460 1288 bp upstream
Tssr14270 transcription start site region 14270 1151 bp downstream
Tssr14271 transcription start site region 14271 1183 bp downstream
Tssr14272 transcription start site region 14272 1196 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory