rs30574180 SNP Detail

Summary

• ID
  rs30574180
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:71667157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGGGGCTG GCCTTATAGG
  TTGCAGATGC AGGTATTAGG AATGGGGGCG TGTGAACAGA CTTGAAGGAA AACGAATCAA
  AAACGAAGAA TCCCTGGAAG ATTTGAAGTG GACACACCCA CGCACGCACT CACACATGCA
  CACACATGCA CACACACCTC CAACCACTTA AAATGGAAGA TTTAAGGTGG TACCAGTGTG
  R
  TCAGAATTTT CCCCTTCCAC ATCTATACAT CAAAAGAAAC ACAGAAGCCA AGGATGACCT
  GTGATAGGTG CCTGGGGTCT ACTCCACCGA ACAACAATGG AAGTATCATC AACCTGGTCC
  ACGGTAGGGT CTGGAGGAGC GTCAGGTGCT GAAAGAAGAA GAAAGGAAAT CAGTCAGTGT
  TGCTACAAGC CCACGCGTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47461892	NES11022022	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30574180					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47461892	NES11022022	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:71667157 () rs orientation: forward

Symbol	Name	Function Class
Fn1	fibronectin 1	within coordinates
Tssr12125	transcription start site region 12125	1934 bp upstream
Tssr12126	transcription start site region 12126	1747 bp upstream
Tssr12127	transcription start site region 12127	665 bp upstream
Tssr12128	transcription start site region 12128	636 bp upstream
Tssr12129	transcription start site region 12129	103 bp downstream
Tssr12130	transcription start site region 12130	441 bp downstream
Tssr12131	transcription start site region 12131	472 bp downstream
Tssr12132	transcription start site region 12132	1386 bp downstream