rs30574846 SNP Detail

Summary

• ID
  rs30574846
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14677164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAAATAC TGATTGGCTG
  GAGTAAAACC CTTCCCCTCG AGACACAAGA AAATAGAGAA GCAAAAAGAG ACATTTTAAG
  TCAATAAATG TATACGTTGT GTACTTGTAT TTTACGAATT ATGATATTTC AATAGATTCA
  AACTGATTTT TTTAGCATTC CATTTTTCTG TAGGGCACAC ATGGGGTGCT TTGCAGAAGT
  W
  AAATGACAAA CCAATGTGCT TATTTATTCC CCTCTTTAAC ATAGACATTT AGAAAGATGG
  AGGACTTTTT TCTGCTTTTT TTTGTTGTTG TTGGGGTTTT GCTTTTGCTT TGGGTTTTGT
  TTTGGGGTTT TGTTTGTTTC TTTGGTTTTC TGTTTTTGTT TTTTCTTAAA ACATTTAATT
  CAATATAGCC CAAGCTGGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49148973	NES12445545	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30574846					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49148973	NES12445545	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14677164 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6151	CpG island 6151	519 bp proximal
Gm10044	predicted gene 10044	957 bp upstream
Gm26661	predicted gene, 26661	552 bp downstream
Gm62508	predicted gene, 62508	777 bp upstream
Gm62514	predicted gene, 62514	within coordinates
Rr487950	regulatory region 487950	341 bp proximal
Rr487951	regulatory region 487951	969 bp proximal
Rr487952	regulatory region 487952	972 bp proximal
Rr487953	regulatory region 487953	1203 bp proximal
Tssr124205	transcription start site region 124205	1187 bp downstream
Tssr124206	transcription start site region 124206	1176 bp downstream
Tssr124207	transcription start site region 124207	1167 bp downstream
Tssr124208	transcription start site region 124208	1122 bp downstream
Tssr124209	transcription start site region 124209	1116 bp downstream
Tssr124210	transcription start site region 124210	1094 bp downstream
Tssr127381	transcription start site region 127381	831 bp upstream