rs30574849 SNP Detail

Summary

• ID
  rs30574849
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14677675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCGAACTC AAGTGCACTC
  TCTCAAGTGC GCGTGTGCAC ACCTCAAGGA CAGTTACTGC AAGGAAGGGT TGGCTTCTGC
  CTACCTCCTT TTTTCCGTCG CCTAGCAACG CCACTAAACT TCGTGAGCAC CGACCTTGGA
  CTCTAGTGAC GGGAGCTTAG CCAACCCTGC AACCTGAGTA GGTGAAAAGC TTTGTCTACG
  Y
  GTCTCACCAG CAGACCTGCT TCTCCTCCAA AGGCCAGACA CTGAAGAGAG TTGGGTGATG
  GTTCAGGTCC TTTGCAGCAC TGCAGTTGGC TGTCGCCTGC TCCAAACTCC AAGTGATTCC
  AAGTTCCCGC AGGTGCAGCC CCATGGTTCA AAATGGCATT TGTTATTTAC TGTTCCAGAA
  TAAACCAACT CTTGGAAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49148976	NES12445593	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30574849					SNP	T	C	C	C	C	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49148976	NES12445593	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14677675 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6151	CpG island 6151	8 bp proximal
Gm10044	predicted gene 10044	446 bp upstream
Gm26661	predicted gene, 26661	41 bp downstream
Gm62508	predicted gene, 62508	266 bp upstream
Gm62514	predicted gene, 62514	within coordinates
Rr487950	regulatory region 487950	within coordinates
Rr487951	regulatory region 487951	458 bp proximal
Rr487952	regulatory region 487952	461 bp proximal
Rr487953	regulatory region 487953	692 bp proximal
Tssr124205	transcription start site region 124205	676 bp downstream
Tssr124206	transcription start site region 124206	665 bp downstream
Tssr124207	transcription start site region 124207	656 bp downstream
Tssr124208	transcription start site region 124208	611 bp downstream
Tssr124209	transcription start site region 124209	605 bp downstream
Tssr124210	transcription start site region 124210	583 bp downstream
Tssr127381	transcription start site region 127381	320 bp upstream