rs30574850 SNP Detail

Summary

• ID
  rs30574850
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14677956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGAAATAAA GCCAGCCCGT CTCTCCACCC CGCCACAGGG
  GTCAACGGTT CTGTGTCTGG CCAACCGCCC CCTGTGTCGC CAAGCAACGC GGCTCAGCCC
  R
  GCACCTGGGT GCACAAGGAG CTTTCCAACC AGGAAGGGTG GCAGTTCTGC ATCTGCCAAT
  TGTGGATTTC ATCTCCTACC CGCCGAACTC AAGTGCACTC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49148977	NES12445592	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30574850					SNP	A	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49148977	NES12445592	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14677956 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6151	CpG island 6151	within coordinates
Gm10044	predicted gene 10044	165 bp upstream
Gm26661	predicted gene, 26661	within coordinates
Gm62508	predicted gene, 62508	within coordinates
Gm62514	predicted gene, 62514	within coordinates
Rr487950	regulatory region 487950	within coordinates
Rr487951	regulatory region 487951	177 bp proximal
Rr487952	regulatory region 487952	180 bp proximal
Rr487953	regulatory region 487953	411 bp proximal
Tssr124205	transcription start site region 124205	395 bp downstream
Tssr124206	transcription start site region 124206	384 bp downstream
Tssr124207	transcription start site region 124207	375 bp downstream
Tssr124208	transcription start site region 124208	330 bp downstream
Tssr124209	transcription start site region 124209	324 bp downstream
Tssr124210	transcription start site region 124210	302 bp downstream
Tssr127381	transcription start site region 127381	39 bp upstream