rs30574853 SNP Detail

Summary

• ID
  rs30574853
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14679380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATATAATTT TAAAACTTAG
  ATTCAACATA GCTAATTTTC TTCTAAAGAG AAATTTCTTT TCTCTTTAGA TCATTTCTTC
  TCTTCTTTCT TCCTTTCTCC CAGGACATAA GACAAGGCCT GCCCCATTCA GGACTATCAT
  GGCTACATCC ATGCTTGGTG TAGCCTGTCT AAGTAAAAGG AGAAAGCCCA GTAGATTTAA
  Y
  TCAGCTTGGA TTTGAATCCT ACTCTAATCT GTTACCTATT ATTTCTTGGA CTGCCTATGA
  GCTCCATAAC TCAATTTCCT CATGCATCTG ATGGGAATTA AACACACTAT CTCTTTTCCA
  CAGCTAGTGT TGTGGTTCTA ATTCAATTCA ATTCCAACCT GCACAAAGCA TGTGCAAGTG
  TTTCCAGCAC CTGACAGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49148980	NES12445699	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	C	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30574853					SNP	C	T	T	T	T	T	C	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49148980	NES12445699	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14679380 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6151	CpG island 6151	954 bp distal
Gm10044	predicted gene 10044	within coordinates
Gm26661	predicted gene, 26661	1062 bp upstream
Gm62508	predicted gene, 62508	within coordinates
Gm62514	predicted gene, 62514	1003 bp upstream
Rr487950	regulatory region 487950	1248 bp distal
Rr487951	regulatory region 487951	1014 bp distal
Rr487952	regulatory region 487952	1212 bp distal
Rr487953	regulatory region 487953	707 bp distal
Tssr124205	transcription start site region 124205	1022 bp upstream
Tssr124206	transcription start site region 124206	1035 bp upstream
Tssr124207	transcription start site region 124207	1046 bp upstream
Tssr124208	transcription start site region 124208	1058 bp upstream
Tssr124209	transcription start site region 124209	1095 bp upstream
Tssr124210	transcription start site region 124210	1121 bp upstream
Tssr127381	transcription start site region 127381	1375 bp downstream