rs30575016 SNP Detail

Summary

• ID
  rs30575016
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:71667458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTATCATC AACCTGGTCC
  ACGGTAGGGT CTGGAGGAGC GTCAGGTGCT GAAAGAAGAA GAAAGGAAAT CAGTCAGTGT
  TGCTACAAGC CCACGCGTTA CAGAAAAACA AAAAGAGTCT TCAAAAATTT GTTTTTTAAA
  ACAGTGGTTC TTACTGCAGG CTAGCCTGGA TCTCTACCCT CAGCATCCCA AAGCTGTATG
  Y
  ATGAGTGTAA GTATGTGTGA TTATGATGTA TGTATGTATC GTATCACCCA CCATACCACC
  ATACCCCATA CCTAAAGTTG CTTTTATCAT GGCTGGGTGC CCACATACCT GTAGTCTGTG
  AGGTAGACAG GATCAAGCTC TGTTTTCCCT CCTCAGATAT CTGATAGACA TTGACAATGT
  ACTTTCTGCC CGGGAGCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47461898	NES11022024	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30575016					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47461898	NES11022024	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:71667458 () rs orientation: forward

Symbol	Name	Function Class
Fn1	fibronectin 1	within coordinates
Tssr12127	transcription start site region 12127	966 bp upstream
Tssr12128	transcription start site region 12128	937 bp upstream
Tssr12129	transcription start site region 12129	169 bp upstream
Tssr12130	transcription start site region 12130	140 bp downstream
Tssr12131	transcription start site region 12131	171 bp downstream
Tssr12132	transcription start site region 12132	1085 bp downstream