rs30575019 SNP Detail

Summary

• ID
  rs30575019
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:71667538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTACAAGC CCACGCGTTA
  CAGAAAAACA AAAAGAGTCT TCAAAAATTT GTTTTTTAAA ACAGTGGTTC TTACTGCAGG
  CTAGCCTGGA TCTCTACCCT CAGCATCCCA AAGCTGTATG TATGAGTGTA AGTATGTGTG
  ATTATGATGT ATGTATGTAT CGTATCACCC ACCATACCAC CATACCCCAT ACCTAAAGTT
  K
  CTTTTATCAT GGCTGGGTGC CCACATACCT GTAGTCTGTG AGGTAGACAG GATCAAGCTC
  TGTTTTCCCT CCTCAGATAT CTGATAGACA TTGACAATGT ACTTTCTGCC CGGGAGCAGG
  TCAGGAATGT TCACGGAAGT GGCCGTGCTT GGGAGATCTT TAAAATACAG GGCAAAGGTT
  AGTGGCCTGA GCAAACCAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47461901	NES11022025	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30575019					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47461901	NES11022025	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:71667538 () rs orientation: forward

Symbol	Name	Function Class
Fn1	fibronectin 1	within coordinates
Tssr12127	transcription start site region 12127	1046 bp upstream
Tssr12128	transcription start site region 12128	1017 bp upstream
Tssr12129	transcription start site region 12129	249 bp upstream
Tssr12130	transcription start site region 12130	60 bp downstream
Tssr12131	transcription start site region 12131	91 bp downstream
Tssr12132	transcription start site region 12132	1005 bp downstream