rs30575754 SNP Detail

Summary

• ID
  rs30575754
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14679555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAATGAGA GGCGTGCAGT
  TGTCGTCATC GCAGGCATTA ATGTTGCAGT TCCTCTCTAT GAGAAGAGTT ACCACCCCCA
  GGTGGCCATG CGCACAAGCA TAGTGCAGTG CAGTTCTGTG AAAGAAGAGC AAGGTTTTCA
  GAAATAATGG AGACCTGTGT CAAAGCACAT TTATCCATAT AATTTTAAAA CTTAGATTCA
  R
  CATAGCTAAT TTTCTTCTAA AGAGAAATTT CTTTTCTCTT TAGATCATTT CTTCTCTTCT
  TTCTTCCTTT CTCCCAGGAC ATAAGACAAG GCCTGCCCCA TTCAGGACTA TCATGGCTAC
  ATCCATGCTT GGTGTAGCCT GTCTAAGTAA AAGGAGAAAG CCCAGTAGAT TTAATTCAGC
  TTGGATTTGA ATCCTACTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49148981	NES12445698	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30575754					SNP	A	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49148981	NES12445698	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14679555 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6151	CpG island 6151	1129 bp distal
Gm10044	predicted gene 10044	within coordinates
Gm26661	predicted gene, 26661	1237 bp upstream
Gm62508	predicted gene, 62508	within coordinates
Gm62514	predicted gene, 62514	1178 bp upstream
Rr487950	regulatory region 487950	1423 bp distal
Rr487951	regulatory region 487951	1189 bp distal
Rr487952	regulatory region 487952	1387 bp distal
Rr487953	regulatory region 487953	882 bp distal
Tssr124205	transcription start site region 124205	1197 bp upstream
Tssr124206	transcription start site region 124206	1210 bp upstream
Tssr124207	transcription start site region 124207	1221 bp upstream
Tssr124208	transcription start site region 124208	1233 bp upstream
Tssr124209	transcription start site region 124209	1270 bp upstream
Tssr124210	transcription start site region 124210	1296 bp upstream
Tssr127381	transcription start site region 127381	1550 bp downstream