rs30575965 SNP Detail

Summary

• ID
  rs30575965
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:71667883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTTGGGA GATCTTTAAA
  ATACAGGGCA AAGGTTAGTG GCCTGAGCAA ACCAATCTTC CACGGCTTCT AAGAGCGCTA
  TACTCAGAGG GTGAAAGCCC ACGAGAAATG TTCTAGTGAA TAGCCTGCAA TTTCCAATGT
  AAGTAAGTTC TTTCATTTTC CACTTTCCCC CACCCCCGAA GATGTATAAT TTTTAATAAC
  M
  TCTCTCTGTT TTTTTGTTTT TTAAAACAGA GCTGTCATTA GATATCAGAG TAGTAGCCAT
  GGTGGAAGGA AGGATGACAG GGCAGGGGTT GGAAGGAGAT TCATTTTTAT GATCTGGGTC
  CTATTCACAT GTATGTTCAG TATCTTCTCA TTATTACATT GGTGGGGGGG GGGCGTACAC
  ACGTGATGGA GGTCAGACTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47461907	NES11022027	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	A	A	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30575965					SNP	A	A	A	A	C	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47461907	NES11022027	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:71667883 () rs orientation: forward

Symbol	Name	Function Class
Fn1	fibronectin 1	within coordinates
Tssr12127	transcription start site region 12127	1391 bp upstream
Tssr12128	transcription start site region 12128	1362 bp upstream
Tssr12129	transcription start site region 12129	594 bp upstream
Tssr12130	transcription start site region 12130	272 bp upstream
Tssr12131	transcription start site region 12131	233 bp upstream
Tssr12132	transcription start site region 12132	660 bp downstream