rs30575971 SNP Detail

Summary

• ID
  rs30575971
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:71668399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTCATCCT GGTCCCCCTT CCATGGCTAT
  GAGAAATACA CAGCACCAGA GGCCACAAAG GTGCCCAGGG AATCCCAGCC TGGCCAGAGA
  GGAGTCACCT CTCTCCTGGC TCTGATGAAA GGGACCGTCT TCCGTTTGAA CTGTGGAGGC
  R
  TTCCGGAATC AAAACTCCTG CGAGCCAAGT AAGTATCTAG AAACACGAGC CGAGGAAGCC
  AGACATTCTA CTTACCAAGG TACTGTGGTT CATCTCCCTC CTCGCTCAGC TCATACTCCA
  CCCGGAAGCC TGACACGGTG TCGGAGGCTG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47461913	NES11021930	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	G	G		G	G	G	G		G
ss319786871	CHEV_1_71675814	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30575971					SNP	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47461913	NES11021930	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:71668399 () rs orientation: forward

Symbol	Name	Function Class
Fn1	fibronectin 1	within coordinates
Tssr12127	transcription start site region 12127	1907 bp upstream
Tssr12128	transcription start site region 12128	1878 bp upstream
Tssr12129	transcription start site region 12129	1110 bp upstream
Tssr12130	transcription start site region 12130	788 bp upstream
Tssr12131	transcription start site region 12131	749 bp upstream
Tssr12132	transcription start site region 12132	144 bp downstream