rs30576565 SNP Detail

Summary

• ID
  rs30576565
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:26836361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACA GGAAAGGAGT TAGTTGGACA
  W
  GGCCTGACGT GCCCAAGATT AAACC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39199507	mCV22747340	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A
ss139210885	ENSMUSSNP2869083	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		A
ss324569420	CHEV_14_27927590	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30576565					SNP	T	T	A	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:26836361 () rs orientation: forward

Symbol	Name	Function Class
Arhgef3	Rho guanine nucleotide exchange factor 3	495 bp upstream
Cpgi6253	CpG island 6253	121 bp proximal
Rr287890	regulatory region 287890	1761 bp distal
Rr287891	regulatory region 287891	361 bp distal
Rr296929	regulatory region 296929	within coordinates
Tssr124726	transcription start site region 124726	443 bp upstream
Tssr124727	transcription start site region 124727	491 bp upstream
Tssr124728	transcription start site region 124728	754 bp upstream