rs30576779 SNP Detail

Summary

• ID
  rs30576779
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:3050579 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  ATTTCGTGAT TTTTCAAGTC GTCAAGTGGA TGTTTCTCGT TTTCCACGAT TTTCAGTTTT
  CTTGCCATAT TCCATGTCCT ACAGTGGACT TTTCTAAATT TTCCACCTTT TCTGTTTTTC
  TCCACATATT TCACGTCCTA ACTTGTGTAT TTCTCATTTT CCGTGATTTT CAGTTTTCTC
  GCCATATTCC AGGTCCTACA GTGTGCATTT CTTATTTTTC ACGTTTTTCA GTGATTTCGT
  CATTTTTCAA GTCATCAAGT GGATGTTTCT CATTTTCCAA AATTTTCAGT TTTCTTACCA
  B
  ATTCCACGTC CTACAGTGTA CATTTCTAAA TTTTCCACCT TTTTCAGTTT TCCTCTACAT
  ATTTCACGTC CTAAAGTGTG TATTTCTCAT TTTCTGTGAT TTTCAGTTTT CTCGCCATAT
  TCCAGGTCCT TCAGTGTGCA TTTCTCATTT TTCACGTTTT TCAGTGATTT CGTCATTTTT
  CAAGTCGTCA AGTGGATGTT TCTCATAATC CATGATTTTC AGTTTTCTTG CCATATTCCA
  AGTCCTACAG TGGACATTTC TAAATTTTCC ACCTTTTTCA TTTTTCCTCG ACATATTTCA
                                                                   
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss46423190	mCV22886444	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G
ss46444583	mCV25362650	ABI	CRAMUS_MOUSE	r	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30576779					SNP	?	?	?	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:3050579 () rs orientation: reverse

Symbol	Name	Function Class
Tssr4284	transcription start site region 4284	1747 bp downstream
Tssr4285	transcription start site region 4285	1722 bp upstream
Tssr4286	transcription start site region 4286	1618 bp downstream
Tssr4287	transcription start site region 4287	1583 bp upstream
Tssr4288	transcription start site region 4288	1555 bp downstream
Tssr4289	transcription start site region 4289	1460 bp upstream
Tssr4290	transcription start site region 4290	1453 bp downstream
Tssr4291	transcription start site region 4291	1373 bp upstream
Tssr4292	transcription start site region 4292	1337 bp downstream
Tssr4293	transcription start site region 4293	1302 bp upstream
Tssr4294	transcription start site region 4294	1300 bp downstream
Tssr4295	transcription start site region 4295	1227 bp upstream
Tssr4296	transcription start site region 4296	1264 bp downstream
Tssr4297	transcription start site region 4297	1200 bp upstream
Tssr4298	transcription start site region 4298	1182 bp downstream
Tssr4299	transcription start site region 4299	1142 bp downstream
Tssr4300	transcription start site region 4300	1104 bp downstream
Tssr4301	transcription start site region 4301	1086 bp upstream
Tssr4302	transcription start site region 4302	1074 bp upstream
Tssr4303	transcription start site region 4303	1019 bp downstream
Tssr4304	transcription start site region 4304	990 bp upstream
Tssr4305	transcription start site region 4305	921 bp downstream
Tssr4306	transcription start site region 4306	902 bp upstream
Tssr4307	transcription start site region 4307	881 bp downstream
Tssr4308	transcription start site region 4308	849 bp upstream
Tssr4309	transcription start site region 4309	805 bp upstream
Tssr4310	transcription start site region 4310	758 bp downstream
Tssr4311	transcription start site region 4311	730 bp upstream
Tssr4312	transcription start site region 4312	650 bp downstream
Tssr4313	transcription start site region 4313	591 bp upstream
Tssr4314	transcription start site region 4314	579 bp downstream
Tssr4315	transcription start site region 4315	555 bp downstream
Tssr4316	transcription start site region 4316	528 bp upstream
Tssr4317	transcription start site region 4317	452 bp downstream
Tssr4318	transcription start site region 4318	428 bp upstream
Tssr4319	transcription start site region 4319	371 bp upstream
Tssr4320	transcription start site region 4320	307 bp downstream
Tssr4321	transcription start site region 4321	279 bp upstream
Tssr4322	transcription start site region 4322	180 bp downstream
Tssr4323	transcription start site region 4323	145 bp upstream
Tssr4324	transcription start site region 4324	115 bp downstream
Tssr4325	transcription start site region 4325	64 bp downstream
Tssr4326	transcription start site region 4326	26 bp upstream
Tssr4327	transcription start site region 4327	23 bp downstream
Tssr4328	transcription start site region 4328	within coordinates
Tssr4329	transcription start site region 4329	25 bp downstream
Tssr4330	transcription start site region 4330	160 bp upstream
Tssr4331	transcription start site region 4331	184 bp downstream
Tssr4332	transcription start site region 4332	290 bp downstream
Tssr4333	transcription start site region 4333	302 bp upstream
Tssr4334	transcription start site region 4334	324 bp downstream
Tssr4335	transcription start site region 4335	471 bp downstream
Tssr4336	transcription start site region 4336	475 bp upstream
Tssr4337	transcription start site region 4337	548 bp downstream