rs30576844 SNP Detail

Summary

• ID
  rs30576844
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:71668408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAACTCCG CACCCCTAAA
  GGATAACATT GTCAGCCATA GGCCTCATCC TGGTCCCCCT TCCATGGCTA TGAGAAATAC
  ACAGCACCAG AGGCCACAAA GGTGCCCAGG GAATCCCAGC CTGGCCAGAG AGGAGTCACC
  TCTCTCCTGG CTCTGATGAA AGGGACCGTC TTCCGTTTGA ACTGTGGAGG CGTTCCGGAA
  Y
  CAAAACTCCT GCGAGCCAAG TAAGTATCTA GAAACACGAG CCGAGGAAGC CAGACATTCT
  ACTTACCAAG GTACTGTGGT TCATCTCCCT CCTCGCTCAG CTCATACTCC ACCCGGAAGC
  CTGACACGGT GTCGGAGGCT GAGACCCATG AGACCACAAA GCTGCTGGCT GTGATTTCAG
  TTACAGATTC AGAAGTGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47461916	NES11021931	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30576844					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47461916	NES11021931	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:71668408 () rs orientation: forward

Symbol	Name	Function Class
Fn1	fibronectin 1	within coordinates
Tssr12127	transcription start site region 12127	1916 bp upstream
Tssr12128	transcription start site region 12128	1887 bp upstream
Tssr12129	transcription start site region 12129	1119 bp upstream
Tssr12130	transcription start site region 12130	797 bp upstream
Tssr12131	transcription start site region 12131	758 bp upstream
Tssr12132	transcription start site region 12132	135 bp downstream