rs30578361 SNP Detail

Summary

• ID
  rs30578361
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:102123720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTTCCTC CACCCCCCAC
  CCCTTTCTCC TTGTCACTTC TCGGCAGAAG GAATTCTGAC TCTGAGAATG AGGATTCGGG
  CTCTTTCCAA AGCTCCACCA TTTTCAGTAG ACTAGAAAAG GCAGACCATA GGTTAGACAG
  CAGCTACCAA AGACCTTCAC TCTTGCTGGA GCTAGCTACC AAACACGCTA TGAGGTCACG
  K
  GACACCCATG CAGCCAGGAG GACCAGCAGT GCTTTGCAGG AATCCAGGTG CACCTGTCTG
  CATGAGCTAC CTGCTTGTGG CTGACCAGAC ACCTTCTCTG ACTGCTTCTG CTGCTACTTT
  AACCTAGACC CGGAGTACCG AGTCATGGGA ACGTAATGAC CCAGGGTAAA GGCACAGTGT
  GTAACAAGCA TCCTGCCTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss39199659	mCV22290641	ABI	CRAMUS_MOUSE	f	SNP	G	T					T		T
ss49352275	NES12571100	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	T	T		G	T	T	T	G	T	G	G
ss146740352	ENSMUSSNP767821	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30578361					SNP	G	T	T	T	T	T	T	G	T	T	T	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49352275	NES12571100	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:102123720 () rs orientation: forward

Symbol	Name	Function Class
Lmo7	LIM domain only 7	within coordinates
Tssr126930	transcription start site region 126930	1957 bp downstream
Tssr126931	transcription start site region 126931	601 bp upstream
Tssr126932	transcription start site region 126932	1185 bp upstream