rs30578704 SNP Detail

Summary

• ID
  rs30578704
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:66434227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGTGTTAAT TATCCCAAAG
  AGAGACTAAA GATCATTGGC CATTATCATT ATTTTAATTT TAGTTTTACT ATAAAAAAAT
  TAAGTTGAGT CAAGTTAAAA ACTTTATATG AGCATTTATT TATAAGTCCA TTTGGTACTA
  AGTACATGAT GTAAAAAACA AAAAGAAAAA CCACGATGCT ATATAGAGAC AATCTATATA
  Y
  ACATACTCAT GTAAGATGTA TGCTAATAAG CTAAGAATTT GAGCATTGTT GTTTGTTGGG
  AAAATATTTT TAGAATCATT GCAAAAGGGA AATGTTAAAG TAAATATATT GTTAGGTTGT
  GCAAAAAACA AAAGCAGACA CATGTGGAAC AATGGATTGT TGTAGGAGAT TAATATGTTA
  TCTACGAGGA AAATGGCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47962324	NES11923165	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30578704					SNP	C	C	C	C	C	C	C	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47962324	NES11923165	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:66434227 () rs orientation: forward

Symbol	Name	Function Class
2610300M13Rik	RIKEN cDNA 2610300M13 gene	within coordinates
Rr150144	regulatory region 150144	175 bp proximal
Rr379514	regulatory region 379514	352 bp upstream