rs30578706 SNP Detail

Summary

• ID
  rs30578706
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:66434264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCATTATC ATTATTTTAA
  TTTTAGTTTT ACTATAAAAA AATTAAGTTG AGTCAAGTTA AAAACTTTAT ATGAGCATTT
  ATTTATAAGT CCATTTGGTA CTAAGTACAT GATGTAAAAA ACAAAAAGAA AAACCACGAT
  GCTATATAGA GACAATCTAT ATACACATAC TCATGTAAGA TGTATGCTAA TAAGCTAAGA
  W
  TTTGAGCATT GTTGTTTGTT GGGAAAATAT TTTTAGAATC ATTGCAAAAG GGAAATGTTA
  AAGTAAATAT ATTGTTAGGT TGTGCAAAAA ACAAAAGCAG ACACATGTGG AACAATGGAT
  TGTTGTAGGA GATTAATATG TTATCTACGA GGAAAATGGC CTTGGAGATA GTGAATGAAA
  AAAAGATGAA AGGAAAAGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47962326	NES11923167	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30578706					SNP	A	A	A	A	A	A	A	A	A	T	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47962326	NES11923167	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:66434264 () rs orientation: forward

Symbol	Name	Function Class
2610300M13Rik	RIKEN cDNA 2610300M13 gene	within coordinates
Rr150144	regulatory region 150144	138 bp proximal
Rr379514	regulatory region 379514	315 bp upstream