rs30580045 SNP Detail

Summary

• ID
  rs30580045
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:70838536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTAGAAAC ATAGTGAGAC
  ATTAAAAACA AGAGTTGGGC CGGGCATGGT GGCACACGCC TTTAATCCCA GCACCCGGGA
  GGCAGAGGCA GGCGGATTTC TGAGTTCAAG GCCAGCCTGG TCTACAAAGT GAGTTCCAGG
  ACAGCCAGGG CTATACAGAG AAACCCTGTC TCGAAAAAAC AAAAACAAAA AACAAAAAAA
  M
  AAAAAAACAT GTAAATTGCA CTTGATGTCA CATGCCTTTG ATCCCAGCAC TCAGGGAGTA
  GAAGCAGGCA GATCTCTACT AGTTCAAGGC CAGCCTGGTC TACAGAGCAA ATTCTAGGAC
  ACAGAAACCA TGTCTTGAAA ATGAAAAAGG AAAAGGAAAC AGAGTTGACA CATTGTTTTT
  TTTTTAATTA TCAGATATTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss39199383	mCV25205800	ABI	CRAMUS_MOUSE	f	SNP	A	C
ss139686308	ENSMUSSNP4227122	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs30580045					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70838536 () rs orientation: forward

Symbol	Name	Function Class
B930095I24Rik	RIKEN cDNA B930095I24Rik gene	834 bp downstream
Cpgi6702	CpG island 6702	1030 bp distal
Dmtn	dematin actin binding protein	1088 bp downstream
Fhip2b	FHF complex subunit HOOK interacting protein 2B	1261 bp upstream
Rr369865	regulatory region 369865	1541 bp downstream
Rr494968	regulatory region 494968	1272 bp distal
Rr494969	regulatory region 494969	771 bp distal
Tssr4471	transcription start site region 4471	1527 bp upstream
Tssr129613	transcription start site region 129613	1284 bp upstream
Tssr129614	transcription start site region 129614	1265 bp upstream
Tssr129615	transcription start site region 129615	1209 bp upstream