rs30580091 SNP Detail

Summary

• ID
  rs30580091
• Variation Type
  SNP
• Alleles
  A/C/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:3050543 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  CAGTGTGCAT TTCTCATTTT TCACGTTTTT CAGTGATTTC GCCATTTTTC AAGTCGTCAA
  GTGGATGTTT CTCATTTTCC ATGATTTTCA CTTTTCTTGT CATATTCCAT GTCCTACAGT
  GGACATTTCT GAATTTTCCA CTTTTTTCAG TTTTCCTCGC CATATTTCAC GTCCTAAAGT
  GTGTATTTCT CATTTTCCGT GATTTTCAGT TTTCTCGCCA TATTCCAGGT CCTACAGTGT
  GCATTTCTCA TTTTTCACGT TTTTCAGTGA TTTCGTCATT TTTCAAGTCG TCAAGTGGAT
  N
  TTTCTCATTT TCCATGATTT TCAGTTTTCT TGCCATATTC CATGTCCTAG GTGGACATTT
  GTAAATTTTC CACCTTTTTC TGTTTTTCTC GCCATATTTT ATGTCCTAAA GTCTATATTT
  CTCATTTTCC GTGATTTTCA GTTTTCTCGC CATATTCCAG GTCCTACAGT GTGCATTTCT
  CATTTTCCAC TTTTTTATCT TATTTCGTCA TTTTTCAAGT CGTCAAGTGG ATGTTTCTCA
  TTTTCCATGA TTTTCAGTTT TCTTGCCATA TTCCATGTCC TACAGTGGAC ATTTCTAAAT
                                                                   
  
  N = A/C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46422538	mCV25357651	ABI	CRAMUS_MOUSE	f	SNP		A	G	G
ss46429465	mCV22817401	ABI	CRAMUS_MOUSE	r	SNP				A	C
ss46431953	mCV22814357	ABI	CRAMUS_MOUSE	f	SNP			G		A
ss46435654	mCV25355575	ABI	CRAMUS_MOUSE	f	SNP				A	G
ss46440142	mCV24988228	ABI	CRAMUS_MOUSE	f	SNP			G		A
ss46442870	mCV22842557	ABI	CRAMUS_MOUSE	f	SNP	G		A
ss46453093	mCV25358947	ABI	CRAMUS_MOUSE	f	SNP			G		C
ss46469448	mCV25368623	ABI	CRAMUS_MOUSE	r	SNP			C	T
ss46469974	mCV22721017	ABI	CRAMUS_MOUSE	r	SNP		C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30580091					SNP	G	?	G	A	?

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:3050543 () rs orientation: reverse

Symbol	Name	Function Class
Tssr4284	transcription start site region 4284	1783 bp downstream
Tssr4285	transcription start site region 4285	1758 bp upstream
Tssr4286	transcription start site region 4286	1654 bp downstream
Tssr4287	transcription start site region 4287	1619 bp upstream
Tssr4288	transcription start site region 4288	1591 bp downstream
Tssr4289	transcription start site region 4289	1496 bp upstream
Tssr4290	transcription start site region 4290	1489 bp downstream
Tssr4291	transcription start site region 4291	1409 bp upstream
Tssr4292	transcription start site region 4292	1373 bp downstream
Tssr4293	transcription start site region 4293	1338 bp upstream
Tssr4294	transcription start site region 4294	1336 bp downstream
Tssr4295	transcription start site region 4295	1263 bp upstream
Tssr4296	transcription start site region 4296	1300 bp downstream
Tssr4297	transcription start site region 4297	1236 bp upstream
Tssr4298	transcription start site region 4298	1218 bp downstream
Tssr4299	transcription start site region 4299	1178 bp downstream
Tssr4300	transcription start site region 4300	1140 bp downstream
Tssr4301	transcription start site region 4301	1122 bp upstream
Tssr4302	transcription start site region 4302	1110 bp upstream
Tssr4303	transcription start site region 4303	1055 bp downstream
Tssr4304	transcription start site region 4304	1026 bp upstream
Tssr4305	transcription start site region 4305	957 bp downstream
Tssr4306	transcription start site region 4306	938 bp upstream
Tssr4307	transcription start site region 4307	917 bp downstream
Tssr4308	transcription start site region 4308	885 bp upstream
Tssr4309	transcription start site region 4309	841 bp upstream
Tssr4310	transcription start site region 4310	794 bp downstream
Tssr4311	transcription start site region 4311	766 bp upstream
Tssr4312	transcription start site region 4312	686 bp downstream
Tssr4313	transcription start site region 4313	627 bp upstream
Tssr4314	transcription start site region 4314	615 bp downstream
Tssr4315	transcription start site region 4315	591 bp downstream
Tssr4316	transcription start site region 4316	564 bp upstream
Tssr4317	transcription start site region 4317	488 bp downstream
Tssr4318	transcription start site region 4318	464 bp upstream
Tssr4319	transcription start site region 4319	407 bp upstream
Tssr4320	transcription start site region 4320	343 bp downstream
Tssr4321	transcription start site region 4321	315 bp upstream
Tssr4322	transcription start site region 4322	216 bp downstream
Tssr4323	transcription start site region 4323	181 bp upstream
Tssr4324	transcription start site region 4324	151 bp downstream
Tssr4325	transcription start site region 4325	100 bp downstream
Tssr4326	transcription start site region 4326	62 bp upstream
Tssr4327	transcription start site region 4327	59 bp downstream
Tssr4328	transcription start site region 4328	within coordinates
Tssr4329	transcription start site region 4329	within coordinates
Tssr4330	transcription start site region 4330	124 bp upstream
Tssr4331	transcription start site region 4331	148 bp downstream
Tssr4332	transcription start site region 4332	254 bp downstream
Tssr4333	transcription start site region 4333	266 bp upstream
Tssr4334	transcription start site region 4334	288 bp downstream
Tssr4335	transcription start site region 4335	435 bp downstream
Tssr4336	transcription start site region 4336	439 bp upstream
Tssr4337	transcription start site region 4337	512 bp downstream