rs30580270 SNP Detail

Summary

• ID
  rs30580270
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127540956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGC CCATCTCACC CTCTACCCCG
  R
  GTTCCTCCAC CTCCCTGGAT GGCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46423724	mCV22734971	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss147734701	ENSMUSSNP4221918	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30580270					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127540956 () rs orientation: forward

Symbol	Name	Function Class
Myo1a	myosin IA	83 bp upstream
Rr213603	regulatory region 213603	within coordinates
Rr221966	regulatory region 221966	1489 bp proximal
Tssr3395	transcription start site region 3395	194 bp upstream
Tssr96244	transcription start site region 96244	1570 bp downstream
Tssr96245	transcription start site region 96245	1535 bp downstream
Tssr96246	transcription start site region 96246	1707 bp upstream
Tssr96247	transcription start site region 96247	1725 bp upstream